Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01820 ATGTATTCTGGCTCCAAACATAGAGGACTAAGAGAGAGGCCAAACCTTAAGGTGTTAGTTGGAAAAATAAGGCAGCAGATATGGAATGAATACTTCATGCTGTCAAGCAAAGACACTTCTGTCTTGTATGTGAAGTTCTGTCTCAATGCCTTGCTGTTTGATTATGGTTCAGCATCCATCTTTGGTGGGCCCAGACCTACTTTACCCTTGATGTTGTGGTCCTGCAATATACACATGATATCTACAAGAAACGGTGGACATGAATTTTACCGTACCTCGCTGGTGACCTTCTTTGAAAGGGTTTTTCTTTTTGTGCGGTGCAAAGACCGGTGGATATGGATATTACAGTTTCTCAATCTGGTGACGTTGTGTAGATGGAAGGGTTTTTCTCTTTGTTCCTCACTCCGGATCTGTAACAGTGCACATAATGGAAGCTTGAAAACAAATTTAGAAGGAAGATCAAAGCGGTATAAAGACCTTGCATTGACATATCTTTTTCTCATGAACAATGTTCATTATATTGTCAGATTAGTTTGGAGGTCTGAAGACAATGATTTGCTAGGTATGACTGGGTACAATGACATCGGAGGATTGTTCAGCAGCATTCAAATCAATACAAAAGAAATACTTGGGCAAAAATTCTTCAGTTGCTTATCTATTCAGGGCCTTAGGTCATCAGGACAGATTGGAACTCTTCTTAAAGGCAAAGCTTGCTCTGGAATAAAAGAAGCTGCAACTAGTTTGACAAAACATCTTGCACAAAGAACCCAGGAGACCTTTGAAGAATTTGAAGTGGCAATCCAGAAAGATGCTAGAAAGACTGCAGTTATAGATGGAACTGTCCATCCTTTGACACGCTCTGTGATTAACTATGTGAGCTATCAATCCACCTTGAAGCAACTTTTTCTGGATTTTGAAAGTGGTGATGATTCTTCACAGCTAGCATATGTAACTGCGAATAATGCAAGCTTTGCAAACCAATTTAGATGGAAAATCAGAGCACAGTATAAAGACCCTGCATTAACACATTGTTTTCTCATGAACAATATTCATTATATTGTAAGATGGGTTTGGAGGTCTGAGGCCAAGGATTTGCTAGGGGATGACTGA 1110 0.3973 MYSGSKHRGLRERPNLKVLVGKIRQQIWNEYFMLSSKDTSVLYVKFCLNALLFDYGSASIFGGPRPTLPLMLWSCNIHMISTRNGGHEFYRTSLVTFFERVFLFVRCKDRWIWILQFLNLVTLCRWKGFSLCSSLRICNSAHNGSLKTNLEGRSKRYKDLALTYLFLMNNVHYIVRLVWRSEDNDLLGMTGYNDIGGLFSSIQINTKEILGQKFFSCLSIQGLRSSGQIGTLLKGKACSGIKEAATSLTKHLAQRTQETFEEFEVAIQKDARKTAVIDGTVHPLTRSVINYVSYQSTLKQLFLDFESGDDSSQLAYVTANNASFANQFRWKIRAQYKDPALTHCFLMNNIHYIVRWVWRSEAKDLLGDD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01820 369 SUPERFAMILY Cullin repeat-like 145 228 IPR016159 -
Cca03g01820 369 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 228 369 - -
Cca03g01820 369 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 145 188 - -
Cca03g01820 369 Pfam Exo70 exocyst complex subunit 145 201 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca03g01820 369 Pfam Exo70 exocyst complex subunit 228 369 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca03g01820 369 SUPERFAMILY Cullin repeat-like 239 369 IPR016159 -
Cca03g01820 369 Gene3D Exocyst complex component Exo70 133 228 - -
Cca03g01820 369 Gene3D Exocyst complex component Exo70 229 369 - -
Cca03g01820 369 PANTHER EXOCYST COMPLEX PROTEIN EXO70 228 369 IPR004140 GO:0000145|GO:0006887
Cca03g01820 369 PANTHER EXOCYST COMPLEX PROTEIN EXO70 145 188 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01820 Cca-Chr3 37430597 37440346 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01820 228 369 EXO70 exocyst subunit family AT5G03540 64.865 1.38e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01820 K07195 - gmx:100813987 178.718