Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01812 ATGAGCTGCAACGGTTGCCGCGTCCTCCGGAAAAGGTGCAGCGAGAGATGCAGCCTCAGATCCTCCCTACAGTGGATCCATTCCCCCCAGGCCCAAGCCCATGCAACTCTCTTCCTCGCTAAGTTCTTCGGTCGTACCGATCTCATGTTTTTCATTTCCTCCGTTCCCCAACAAAACAGACCTGCGCTTTTTCAATCTCTACTATTCGAAGCCTGCGGACGGATCATTAATCCCGTCAACGGTGCCGTCGGACTGCTCTGCACCGGTAACTGGCACATGTGCCAGGCCGCCGTAGACACCGTCCTCGCCGGAGGCCTTCTCCGTCCTCTGCCGGAGGTTGCGCCGCCCGCTTTCGATGAATCCTCCGACGCTATGTTCTCTCAGTTTCAGGCGGTGGCGTCCGATTCTTTCAAGAGGACCAGCACTGCGGATACGTCTTTGGTTTCCGAAGAATCGCAGATGGCGAACTACAATCACAAAAAGCTTTTGAATCTGTTTGTCTAG 504 0.5496 MSCNGCRVLRKRCSERCSLRSSLQWIHSPQAQAHATLFLAKFFGRTDLMFFISSVPQQNRPALFQSLLFEACGRIINPVNGAVGLLCTGNWHMCQAAVDTVLAGGLLRPLPEVAPPAFDESSDAMFSQFQAVASDSFKRTSTADTSLVSEESQMANYNHKKLLNLFV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01812 167 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cca03g01812 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 127 - -
Cca03g01812 167 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Cca03g01812 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01812 Cca-Chr3 37342556 37343457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01812 1 113 AS2 family AT3G49940 72.566 1.75e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g01812 LOB 9.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01812 - - gmx:100800624 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01812 03 37342556 37343457 Cca03g01812 03 37342556 37343457 ECH