Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01807 ATGGGACCTCTTGGTCTTGAAGCCTTCCCTGATGGAGAATGGGATTGCTTTGGCAAAATGTTGGCCAATGAAGCCCATTATTCCTCTCCACAACATGATGGGAACATGTTTTGCGCCACTCATGATGCTGGGGGAAATAGGAGATTGTTTTACTCTTTTGATTCTCACAACTCTAATTTTCAGCATATTTCTAGCAATAGCAATATTAGTGGCTATAATGTCTTCATTGATCATGTGCCTTTAGAAGAGAAAATAAACTCACATGGGCATTGTAACAAAAAACCACGTCTTTCAAAAGATGTGCAACATTGCATGAACAACCAGAAGCTAGACAAAAATGGAAATGAGGCAGAAGAGACTAATGGAAGTTGTTCTTCTAGTAGTCACACTTACACCCCAGAGGATGATAATGCTTCTGCTCTCAGCTTAAAAGGGAAAACAAAAGCAACAGATCCTCAGAGTCTTAATGCAAGGAAAAGAAGAGAGAGAATAAATGAGAGACTGAGAATTCTACAGAATCTTGTCCCCAATGGAACAAAGGTTGATATAAGCTCTATGCTTGAAGAGGCAGTCCATTACGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCAGATAGCTTATAATGGACTTGACATTGTACTCAATCTCACTCAGAAGAGTTCTCCACCTTTGTGA 705 0.3972 MGPLGLEAFPDGEWDCFGKMLANEAHYSSPQHDGNMFCATHDAGGNRRLFYSFDSHNSNFQHISSNSNISGYNVFIDHVPLEEKINSHGHCNKKPRLSKDVQHCMNNQKLDKNGNEAEETNGSCSSSSHTYTPEDDNASALSLKGKTKATDPQSLNARKRRERINERLRILQNLVPNGTKVDISSMLEEAVHYVKFLQLQIKLLSSDDLWMYAQIAYNGLDIVLNLTQKSSPPL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01807 234 Gene3D - 148 216 IPR036638 GO:0046983
Cca03g01807 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Cca03g01807 234 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 226 - -
Cca03g01807 234 CDD bHLH_AtIND_like 149 211 - -
Cca03g01807 234 PANTHER TRANSCRIPTION FACTOR BHLH54 85 226 - -
Cca03g01807 234 MobiDBLite consensus disorder prediction 110 152 - -
Cca03g01807 234 Pfam Helix-loop-helix DNA-binding domain 157 198 IPR011598 GO:0046983
Cca03g01807 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 215 IPR036638 GO:0046983
Cca03g01807 234 SMART finulus 154 203 IPR011598 GO:0046983
Cca03g01807 234 MobiDBLite consensus disorder prediction 110 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01807 Cca-Chr3 37303413 37304534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01807 111 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 71.429 3.12e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01807 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01807 - - ccaj:109796323 476.478