Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01805 ATGATACTTGCTGTCTGTGCCTTTGTCTCTTTGGTGGTGGGTATAATAATGGAAGGGTGGCCCAAGGGTGCACAAGATGGAATTGGTATTGTTGCTAGCATATTGCTTGTAGTGTTTGTTACTGCTACAAGTGATTACAGACAATCACTGCAGTTTAAGGATCTTGATAAAGAGAAGAAAAAAATTATGGTTCAGGTCACGAGAAATGGTTGTAGGCAGAAGCTTTCAATATATGATCTGCTTCCCGGCGATATTGTCCATCTAAATATTGGAGATCAGGTCCCTGCTGATGGCCTTTTTGTGTCTGGTTTCTCTGTGTTAATAAATGAATCAAGCTTGACAGGAGAAAGTGAACCGGTGAATGTCAGTGAACTTAATCCTTTTCTTCTGTCTGGAACCAAAGTCCAGGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGAACGCAGTGGGGTAAACTAATGGCTACTCTAAGCGAAGGGGGAGATGATGAAACACCTTTGCAGGTAAAACTCAATGGTGTTGCGACCATTATTGGGAAAATAGGCCTCTTTTTCGCAGTTGTGACCTTTTCTGTGCTTGTCCAAGGGCTATTTAGCCGCAAGCTGCGAGAAGGAACCCAATGGACTTGGTCTGGTGATGATGCTATGGAAATTGTGGAATTCTttgctattgctgtaactattgttgttgttgctgttcctgaaggtttgcctttagctgtAACATTAAGCCTTGCTTTTGCAATGAAAAAGATGATGAATGATAAGGCACTTGTTCGTCACTTGGCTGCATGTGAGACAATGGGATCTGCCACTACTATCTGCAGTGACAAGACTGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTACATATGTGGGAAGGTTAAAGAAGTAAACAGCTCTAAGGTCTCATCTGATCTTCATGATTCTGCTCTTGCGATTCTTCTTGAATCGATATTTAACAACACTGGAGGAGAAGTTGTCAAAAACAAAGATGAGAAGATCGAGATTTTGGGATCACCAACCGAGACTGCACTCTTGGAATTTGGGCTGTCACTAGGTGGTGATTTCCTAAAGGAGCGACAAAGGTCAAAACTTGTGAAAGTTGAGCCATTTAATTCTATAAAGAAGCGCATGGGGGTGGTTCTACAGCTTCCTGATGGTGGTTTCAGAGCACACTGCAAAGGCGCCTCTGAAATAATTCTAGCTGCATGTGACAAAGTTGTGGACTCAAGTGGCGAGATTGTTCCCCTCAATGAAGATTCCATCAATCACTTGAAGGATATGATTGAAACATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCTTACGTGGATATTCATGATGAGTTTTCTGTTGGAACACCTATTCCTACTAGGGGATACACTTGTATAGGAATTGTGGGTATTAAAGATCCAGTTCGCCCTGGTGTTCGTGAATCTGTTGCCATTTGTAGGTCAGCTGGTATTGCTGTTAGGATGGTTACTGGAGACAACATAAATACTGCAAAGGCTATTGCAAGGGAATGCGGAATTTTAACCGATGGTATTGCAATTGAAGGCCCCGAGTTTCGTGAGAAGAGTGAGGAGGAATTGCTTGATATCATCCCAAAAATTCAGGTAATGGCCCGATCTTCACCCATGGATAAGCATACCCTGGTGAAACACTTGAGGACAACATTTCAAGAGGTTGTTTCAGTTACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGTGCGGACGTAATAATTCTAGACGATAACTTCTCTACTATTGTGACCGTGGCCAAATGGGGTCGCTCAGTCTACATAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCCTGTTTGACCGGAAATGCTCCCCTCACTGCGGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCTCTAGCCACTGAACCTCCTAATGACGAGTTGATGAAAAGACCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTATATATCAATTTGTCGTAATATGGTTCCTCCAGACCAGAGGAAAAGTAACATTTCATCTTAATGGCCCAGATTCTGATATGACATTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATTAGTTCCAGGGATATGGAGAGGATAAATGTTTTTCAAGGTATACTGAAGAATTATGTGTTTGTTGCTGTCCTCACCTCTACTGTCATCTTCCAAATTGTAATTGTTGAATTCTTGGGCACCTATGCAAACACATCTCCACTTAGTTTGAAGCAATGGTTTGGTAGCATTCTCCTTGGAGTTCTTGGCATGCCAATTGCAGCAGCTCTAAAGATGATTCCCGTGGGATCTGTCTAA 2520 0.4119 MILAVCAFVSLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIMVQVTRNGCRQKLSIYDLLPGDIVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVSELNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGTQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKAYICGKVKEVNSSKVSSDLHDSALAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFLKERQRSKLVKVEPFNSIKKRMGVVLQLPDGGFRAHCKGASEIILAACDKVVDSSGEIVPLNEDSINHLKDMIETFAGEALRTLCLAYVDIHDEFSVGTPIPTRGYTCIGIVGIKDPVRPGVRESVAICRSAGIAVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLDIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRPPVGRKGNFISNVMWRNILGQSIYQFVVIWFLQTRGKVTFHLNGPDSDMTLNTLIFNSFVFCQVFNEISSRDMERINVFQGILKNYVFVAVLTSTVIFQIVIVEFLGTYANTSPLSLKQWFGSILLGVLGMPIAAALKMIPVGSV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01805 839 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 284 485 IPR023299 GO:0000166
Cca03g01805 839 Gene3D - 275 620 IPR023214 -
Cca03g01805 839 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 544 656 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 219 303 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 370 521 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 Pfam E1-E2 ATPase 61 256 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 575 594 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 599 611 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 109 123 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 278 292 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 473 484 - -
Cca03g01805 839 PRINTS P-type cation-transporting ATPase superfamily signature 495 505 - -
Cca03g01805 839 Gene3D - 1 833 - -
Cca03g01805 839 SUPERFAMILY Calcium ATPase, transduction domain A 63 158 IPR008250 -
Cca03g01805 839 Pfam Cation transporting ATPase, C-terminus 660 834 IPR006068 -
Cca03g01805 839 Pfam Cation transport ATPase (P-type) 335 414 - -
Cca03g01805 839 SFLD p-type atpase 260 627 IPR044492 -
Cca03g01805 839 PANTHER CALCIUM-TRANSPORTING ATPASE 1 836 - -
Cca03g01805 839 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 835 IPR023298 -
Cca03g01805 839 Gene3D - 49 161 - -
Cca03g01805 839 CDD P-type_ATPase_Ca_PMCA-like 2 708 - -
Cca03g01805 839 Gene3D - 288 480 IPR023299 GO:0000166
Cca03g01805 839 SUPERFAMILY HAD-like 276 680 IPR036412 -
Cca03g01805 839 ProSitePatterns E1-E2 ATPases phosphorylation site. 280 286 IPR018303 -
Cca03g01805 839 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 1 836 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca03g01805 839 SFLD C1.7: P-type atpase like 260 627 - -
Cca03g01805 839 PRINTS H+-transporting ATPase (proton pump) signature 607 632 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 PRINTS H+-transporting ATPase (proton pump) signature 575 591 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 PRINTS H+-transporting ATPase (proton pump) signature 432 450 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01805 839 PANTHER CATION TRANSPORTING ATPASE 1 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01805 Cca-Chr3 37277033 37284130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01805 1 838 Primary Pumps ATPases AT1G27770 81.376 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01805 K01537 - gmx:547998 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01805 03 37277033 37284130 Cca03g01805 03 37277033 37284130 ECH