Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01804 ATGGATGATCTTTCGTCCAGCCTTCTGTGCCAAGAAAACGAAACTTGTTTGGAAGAAGGGGGTGAAGAATTGGAACACCCATTCGTGGAATCGCAGCATGATTGTGGGGTTTCGGAGGATGAACATGTGGGAATTTTGATTGAGAGAGAGGTGGTTCTTGGGTTCAAAAGGGACGAAAGTTTGGTGCTTGGGGACTGGGTGAAACGAGCACGCATGGAAGCAATCGATTGGATTCTCAAAAGTGAAAAGTGTTGGGCAATTCGGTTGCTATCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAGTGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGACTATTCTTTTGAGGGAAAGGTGATTCAGAAAATGGAGCTTTTGGTGCTGAGCACATTGGAGTGGAAAATGGGAATCGTCACTCCCTTTGATTTTCTTTCCTATTTCCACACAAAGTTGTGCAAAGATTCCCCACCAAGTCCTATTTTTTCCAAGACCATGCAATTCATCTTCACTACAATGAAAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCAGCGGCTGCTACTTTGGTGGCAATGGATCAACAATTGACGATTGAAGCAGTGGAGTTGAAGATGAGTTCAATTCCACAATATAGGCTACTAGAACCAAAAGATGTATTCGAGTGCTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGAGACACACATACGCCAATTGACATGATTGAGAGCTCTCGAGTTACTTCTGCAGCGGTGGCAAAGAGAAGAAGACTCACATTCAGTGATGATGAAGGAAGTAGTGGTGGGAAGGGACAAGGCTAG 849 0.4358 MDDLSSSLLCQENETCLEEGGEELEHPFVESQHDCGVSEDEHVGILIEREVVLGFKRDESLVLGDWVKRARMEAIDWILKSEKCWAIRLLSIACLSLAAKMEECNVPGLSEFKLDDYSFEGKVIQKMELLVLSTLEWKMGIVTPFDFLSYFHTKLCKDSPPSPIFSKTMQFIFTTMKEVNLMDHKPSVIAAAATLVAMDQQLTIEAVELKMSSIPQYRLLEPKDVFECYNLIQRLYEENTKRDTHTPIDMIESSRVTSAAVAKRRRLTFSDDEGSSGGKGQG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01804 282 SUPERFAMILY Cyclin-like 125 237 IPR036915 -
Cca03g01804 282 Gene3D - 83 140 - -
Cca03g01804 282 Gene3D - 141 202 - -
Cca03g01804 282 Pfam Cyclin, C-terminal domain 142 246 IPR004367 -
Cca03g01804 282 CDD CYCLIN 80 132 IPR013763 -
Cca03g01804 282 PANTHER CYCLINS 83 247 IPR039361 -
Cca03g01804 282 SUPERFAMILY Cyclin-like 34 139 IPR036915 -
Cca03g01804 282 PANTHER CYCLIN-D5-1 83 247 - -
Cca03g01804 282 Pfam Cyclin, N-terminal domain 86 139 IPR006671 -
Cca03g01804 282 SMART Cyclin_C_2 142 267 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01804 Cca-Chr3 37272616 37275139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01804 8 217 Core Cell Cycle Gene Families AT4G37630 32.143 1.98e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01804 K18811 - gmx:100780266 468.003