Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01802 ATGGCTTTTTCTAGGCCTCCTGATATCAACATTGAAGCCGAACACTGTCCTGAAGCTGTGCATGAATGGTATAGGCTCACATCGCTGCCAGATTACAAGCGCCAATGCGCCTTAAGCAGGGACTTGTCCCTCAAAGCCAAGAAGCATCTTGTTTTTCTGGGTTGGAAATTTTGGTATGTCAATAAGCAAGGAAGGTGGGAACTGCGTTATACATCACCCATCACCGGTAAGAATTACATCTCTCTAACAAGGGCATGCCAAGGTTGCATACAGGAGGGAGGGTGCAACCTTCAAGAAAACACTTTTGTTCATCAGCAACACTCTTTGTCTTCTGCACCAGATAAGAAGATAAAGAAACCAAGAAAATCCAAGAAAAGGAAGGTGCTGTCAAGGGGGTTAAAGAAAAGGCATAAGGCtgatactgatgatgatgatgatgatgaGTCATTGGATGGTGACGAGAAAGCTGAGGAGGAGTTAGCAGAAGCCTCTAATCTTGCATGTGGAAGAGGTAAGAGTTTAAGATCGATGATGCGAGGCGGTGCTTTGCCACAAAGTTCAGAATCTTCACAACACAATCATGGAACACTTATCCCTTGGTTAATTGATAGCAACGTGGTGCCTTTGCATTCCGCGGTTTTATGCCGTGGTGCAAATAACGTGGTGAAGAAAGGGAAGCTATGTCGTGAGGGCATTGTTTGTGATTGCTGTGGTGAGTTGTTCTCTCCTACTCGCTTTGAGGCTCATGCTAGGTGTTACAAGCATAAACCATCTGCTAGCATTTTCTTGTTAGATGGAAGATCGTTGTTGGATATCCAAAAGGAAGCCTCGAGTTCACAGAAAAAGGAGGTGGGTTGTTTAGAAGAAGAAAGGGATCACCGTCAGTGCCAGTTTCAAAATGAAAATATTTGTTTCGTTTGTCGTTTTGGTGGTGACATAGTGTTATGTGATGGCTGCCCTTCTTCTTTCCATCTTAGTTGTTTAGGGTTAGACCACGTTCCTGATGGAGATTGGTTTTGTCCCGCGTGTTCTTGCAAAATATGCAAACAATTTAGGTATGCCAAGGATTGTGGTGATAGTAGTGTTTTAGTTTGTTTTCAATGTGAGCGAAAACACCACATTGGCTGCTTAAAAGAACAAAGCTTTACTCATACGGATGGTTGGTTCTGCAGTGAAACTTGTGGGAAGATATTTATCGGTCTTCAGAAGTTAATGGGGAAAAGGATTCCAATCGGTGCCAATAATCTAACATGGACATTGTTGAAGTCTGCTAAAAGTGGTAGATGTGGAGAATCTGAACTTTCTTGGGACGAGGATGGAAGTTTGAGTCAAAATGAAAGGAAGCTAAGTCTGGCTCTCAGTGTATTGCATGAGTCATTTGACCGAGTTATTGATGCTTTCTTTGGGACAGATATGATAGAAGATGTTGTTTTCAGCAGAGGTTCGGAGCTCAATCGTTTGAACTGTCATGGTTTCTATACTGTAGTATTGGAGAAGAATGAGGAAGTGATTTCTGTTGCAACAATAAGGGTTTTTGGCAAGAGGGTTGCAGAAATTCCTTTTGTGGCTACTAGGATGCAGTTTAGGAGACAGGGAATGTGTGGCATCATGATGAATGAGATTGAGAAGCAGTTGACTCTCTTGGGAGTAGAGGAGATTGTTTTGCCTTCTGCACAGGAAGCAATAGATACTTGGACAAAGACCTTTGGCTTTGCAAGAATGACACTTTCAGTTAAGTCTCAGTTTCTTGATCATGTTTTTCTTGACTTCAAAGATATCATTATGTGTCACAAAGTATTGGTGAAACAATTTGTTACATGA 1821 0.4152 MAFSRPPDINIEAEHCPEAVHEWYRLTSLPDYKRQCALSRDLSLKAKKHLVFLGWKFWYVNKQGRWELRYTSPITGKNYISLTRACQGCIQEGGCNLQENTFVHQQHSLSSAPDKKIKKPRKSKKRKVLSRGLKKRHKADTDDDDDDESLDGDEKAEEELAEASNLACGRGKSLRSMMRGGALPQSSESSQHNHGTLIPWLIDSNVVPLHSAVLCRGANNVVKKGKLCREGIVCDCCGELFSPTRFEAHARCYKHKPSASIFLLDGRSLLDIQKEASSSQKKEVGCLEEERDHRQCQFQNENICFVCRFGGDIVLCDGCPSSFHLSCLGLDHVPDGDWFCPACSCKICKQFRYAKDCGDSSVLVCFQCERKHHIGCLKEQSFTHTDGWFCSETCGKIFIGLQKLMGKRIPIGANNLTWTLLKSAKSGRCGESELSWDEDGSLSQNERKLSLALSVLHESFDRVIDAFFGTDMIEDVVFSRGSELNRLNCHGFYTVVLEKNEEVISVATIRVFGKRVAEIPFVATRMQFRRQGMCGIMMNEIEKQLTLLGVEEIVLPSAQEAIDTWTKTFGFARMTLSVKSQFLDHVFLDFKDIIMCHKVLVKQFVT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01802 606 SUPERFAMILY FYVE/PHD zinc finger 290 353 IPR011011 -
Cca03g01802 606 Gene3D - 438 602 - -
Cca03g01802 606 ProSiteProfiles Zinc finger PHD-type profile. 301 346 IPR019787 -
Cca03g01802 606 MobiDBLite consensus disorder prediction 117 134 - -
Cca03g01802 606 MobiDBLite consensus disorder prediction 144 158 - -
Cca03g01802 606 Pfam Tify domain binding domain 225 276 IPR032308 -
Cca03g01802 606 Pfam Acetyltransferase (GNAT) family 487 571 IPR000182 GO:0016407
Cca03g01802 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 361 IPR013083 -
Cca03g01802 606 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 455 593 IPR000182 GO:0016407
Cca03g01802 606 Pfam PHD-finger 303 346 IPR019787 -
Cca03g01802 606 SMART PHD_3 303 344 IPR001965 -
Cca03g01802 606 SMART PHD_3 345 394 IPR001965 -
Cca03g01802 606 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 480 571 IPR016181 -
Cca03g01802 606 CDD NAT_SF 495 555 - -
Cca03g01802 606 MobiDBLite consensus disorder prediction 105 163 - -
Cca03g01802 606 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 601 - -
Cca03g01802 606 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 8 601 - -
Cca03g01802 606 CDD PHD5_NSD 303 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01802 Cca-Chr3 37222958 37224778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01802 158 548 PHD Transcription Factor Family AT5G58610 41.089 3.42e-89 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g01802 Acetyltransf_1 3.9e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01802 - - gmx:102668789 684.1