Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01791 ATGACACTGGGAGTTGCTGAATCGGGATCTTCTCGAGGTTGCGGAAATCAGAATCATATTCCAAAGCCTCTGATACTCGAGGCACTCGTCTCCGATCCAATTCTTCGTTCCTCCATGGAGGACGCATTTGCCAGATCTATTCCCGAGGTCCTTGATTTCTTTGGAGTGGACCCGACTAAGGGTTTATCTGATGCAGAGGTAGCACAACATGGTAGACACTATGGTAAAAACGTGCTTCCTGAAGATCAAAGAGCTCCTTTTTGGAAATTGGTTTTGAAGCAATTTGATGATTTGCTTGTAAAGATACTAATAGCTGCTGCTCTTATATCTTTTATTCTGGCATTAATTAATGGAGAAACAGGCTTGATGGCATTTCTGGAGCCTTCTGTTATTCTGATGATATTGGCAGCAAATGCAGCTGTTGGAGTGATTACAGAAACAAATGCTGAAAAAGCTCTCGAGGAGCTACGTGCCTATCAAGCTGATGTGGCAACTGTCTTGCGCAATGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATANNNNNNNNNNTCCTGCTGATATGAGGATGATTGAAATGCTAAGCAATCAAGTGCGTGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCTGTGGAGAAAGAGCTTAAAACAACCACAACAACAAATGCTGTATACCAAGATAAAACAAATATTCTGTTCTCGGGTACGGTTATCGTTGCTGGTAGGGCAAGAGCTGTTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGAGGCGACACCCTTGAAAAAGAAGCTGGATGAGTTTGGTACCTTTTTGGCCAAGGTTATAGCAGGGATTTGTGTCTTGGTCTGGATTGTAAATATTGGTCATTTTCGCGACCCTTCTCATGGTGGTTTCTTGCATGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCGGTTGCAGCAATTCCTGAAGGTCTCCCTGCAGTTGTTACCACGTGTTTGGCTCTTGGAACAAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCCTGCCATCAGTTGAGACCTTGGGCTGCACCACTGTTATTTGTAGTGACAAAACGGGGACTCTAACTACCAATATGATGTCAGTTGCAAAGGTTTGTGTTGTTGAATCTGCAAAACGTGGTCCTGTTGTTTCTGAATACAGTGTCAGTGGAACAACATATGCACCTGAAGGCATAATATTTGGCAGTACAGGGATGCAGCTTGACTTTCCTGCTCAATTGCCATGTCTTCTTCACATAGCAATGTGTTCTGCTCTTTGCAATGAATCAACCCTACAGTATAATCCTGATAAAGGGAATTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGCCTTGGCAGAAAAGATTGGTCTCCCTGGTTTCAATTCGATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGATACATGTTTTGGAATTTTCCCGAGATCGGAAAATGATGAGTGTCCTATGCAGCCGGAACCAGATGCATGTTTTGTTCTCAAAGGGTGCCCCAGAAAGTATAATATCTAGATGTACAACCATTCTGTGCAACGATGATGGTTCCATTGTGCCACTTACAGCTGATATTCGAGCAGAGCTGGACTCAAGGTTTCAAAGTTTTGCAGCAAAAGAAACATTAAGATGCCTTGCCTTGGCCCTGAAATGGATGCCCTCAGTTCAACAGTCATTGTCCTTTGATGATGAGAAAGATCTTACATTTATTGGGTTGGTTGGGATGCAAGATCCTCCAAGAGATGAAGTAAGAAATGCAATGCTTTCGTGTATGACTGCTGGCATACGTGTTATAGTTGTCACCGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATAGATCTTTCTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCACCACTGCAACAAACTATAGCATTGCAACGTATGGCTCTTTTTACAAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCTTTACAACACCAGAATGAAGTGGTTGCAATGACGGGTGATGGAGTTAATGATGCACCTGCATTGAAGAAGGCAGATATAGGAATTGCTATGGGGTCAGGGACAGCTGTTGCAAAGAGTGCTTCAGACATGGTGCTTGCTGATGACAATTTTGCCTCAATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATCGGCGAAGTTGTCTGTATATTTGTGGCTGCAGTGCTTGGAATACCGGATACCCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTTACTGATGGATTGCCTGCCACTGCAATTGGCTTCAATAAACCAGACTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTCACAGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCCACCGTTGCTGGTTTTATCTGGTGGTTTGTTTATTCTGATAGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTGATACGTGCCCAACTAGGGAGACAACTTATCCTTGCAGTATATTTGACGATCGACATCCATCTACTGTATCAATGACCGTGCTTGTCGTGGTTGAGATGTTCAATGCTTTGAACAATCTTAGTGAAAATCAATCTCTTCTGGTCATCCCTCCCTGGAGTAACTTGTGGCTTGTTGCTTCTATAATCCTAACTATGCTTCTTCACATACTAATCTTGTATGTTCGCCCACTGTCAGTTCTTTTCTCTGTAACACCATTATCTTGGGCTGACTGGATAGTTGTCCTCTATCTTTCACTGCCTGTTATAGTCATTGATGAGGTGTTAAAGTTCTTCTCCAGAAATCCCATCGGTTTGAGATTCAGATTATGGTTCCGGAGGTCTGATTTACTTCCAAAAAAAGAAGTACATAACAAGTAA 3141 0.4288 MTLGVAESGSSRGCGNQNHIPKPLILEALVSDPILRSSMEDAFARSIPEVLDFFGVDPTKGLSDAEVAQHGRHYGKNVLPEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADXXXXPADMRMIEMLSNQVRVDQAILTGESSSVEKELKTTTTTNAVYQDKTNILFSGTVIVAGRARAVVVGVGPNTAMGSIRDSMLRTEDEATPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLHGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVESAKRGPVVSEYSVSGTTYAPEGIIFGSTGMQLDFPAQLPCLLHIAMCSALCNESTLQYNPDKGNYEKIGESTEVALRALAEKIGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKIHVLEFSRDRKMMSVLCSRNQMHVLFSKGAPESIISRCTTILCNDDGSIVPLTADIRAELDSRFQSFAAKETLRCLALALKWMPSVQQSLSFDDEKDLTFIGLVGMQDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDQLIDLSEHSYTASEFEELPPLQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKPDSDVMRAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDTCPTRETTYPCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIILTMLLHILILYVRPLSVLFSVTPLSWADWIVVLYLSLPVIVIDEVLKFFSRNPIGLRFRLWFRRSDLLPKKEVHNK 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01791 1046 SUPERFAMILY Calcium ATPase, transduction domain A 162 280 IPR008250 -
Cca03g01791 1046 Pfam Cation transporting ATPase, C-terminus 820 1019 IPR006068 -
Cca03g01791 1046 SFLD p-type atpase 371 788 IPR044492 -
Cca03g01791 1046 SUPERFAMILY Calcium ATPase, transmembrane domain M 40 1021 IPR023298 -
Cca03g01791 1046 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 91 891 IPR005782 GO:0005388|GO:0006816|GO:0016021
Cca03g01791 1046 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 42 1024 - -
Cca03g01791 1046 SUPERFAMILY HAD-like 623 784 IPR036412 -
Cca03g01791 1046 Gene3D - 93 1021 - -
Cca03g01791 1046 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 130 415 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01791 1046 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 706 821 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01791 1046 PRINTS H+-transporting ATPase (proton pump) signature 736 752 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01791 1046 PRINTS H+-transporting ATPase (proton pump) signature 708 724 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01791 1046 PRINTS H+-transporting ATPase (proton pump) signature 767 792 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g01791 1046 CDD P-type_ATPase_SERCA 43 1021 - -
Cca03g01791 1046 SFLD C1.7: P-type atpase like 371 788 - -
Cca03g01791 1046 Gene3D - 387 780 IPR023214 -
Cca03g01791 1046 SMART Cation_ATPase_N_a_2 41 115 IPR004014 -
Cca03g01791 1046 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 397 634 IPR023299 GO:0000166
Cca03g01791 1046 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Cca03g01791 1046 Pfam haloacid dehalogenase-like hydrolase 627 750 - -
Cca03g01791 1046 Pfam Cation transport ATPase (P-type) 460 569 - -
Cca03g01791 1046 Pfam E1-E2 ATPase 160 369 - -
Cca03g01791 1046 Gene3D - 400 637 IPR023299 GO:0000166
Cca03g01791 1046 Pfam Cation transporter/ATPase, N-terminus 46 110 IPR004014 -
Cca03g01791 1046 Gene3D - 60 282 - -
Cca03g01791 1046 PANTHER CALCIUM-TRANSPORTING ATPASE 42 1024 - -
Cca03g01791 1046 Coils Coil 149 169 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 736 755 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 652 662 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 218 232 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 630 641 - -
Cca03g01791 1046 PRINTS P-type cation-transporting ATPase superfamily signature 759 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01791 Cca-Chr3 37110980 37135530 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01791 39 1040 Primary Pumps ATPases(2) AT1G10130 83.633 0.0 1723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01791 K05853 - gmx:100783509 1869.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01791 03 37110980 37135530 Cca03g01791 03 37110980 37135530 ECH