Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01788 ATGGCTGGAGCGAAAGAAGGCAAGGCCTTGGATCTGAAGACGGTGATTTGCGAGCTGGAGTCGTCAACGATGGAAGTCCCTTCCGTGTTCGTGTGCCCCATATCGCTGGAGGCGATGCAAGACCCCGTGACCCTCTGCACGGGCCAAACCTACGAGCGGTCCAACATCCTCAAGTGGTTCTCCCTCGGCCACAACACGTGTCCCACCACTATGCAAGACCTCTGGGACCGCTCCCTCACGCCCAACGCCACTCTCCGCCACCTCATCCTCACCTGGTTCTCCCACAAGTACTCCGCCCTCACCAAGACACTCCACCACCTCCACGCCACCGCCTTACACCTCTTGGACACCCTCACCAAAGTCAAGGGCCAAAACAGAGTTCGCGCCCTCAAACACCTCCGCCAGCTCCTCGACTGCCACGTCTCCACCCGGAAAACCGTCCTGGAACACAACGCCCTTCCCTTGATTTCCTCCTTCTTGGGCCCTTTCACTTCCCACGCCGTTGGCTCCGAGGTCATTGGGATTCTCGTCAACTTGGATTTGTCTTCCGACTTCAAGAAGACCCTCATGCAACCCTCCAAGGTCTCGTTGCTCGTCGACATCATGAACGAGGGAACCCTTCAGACCAAGATGAACTGCGCCAACTTGATTCAAATCTTGTTCATCGAAGCCAACGCCTCCGAATCCCACGCTGAGTTTCTTTCAAGTTTGAGTCTTTTAGTCGGCTTGTTAAGGCTAGTTAGAGATAAGAAACACCCAACTAGTGTTTTAACGGGACTCGTGTTGCTCAACATCGTGTGTTCGCGTGAATCGGTTAGAACCTCCCTTGTCACCCTAGGCGCGGTGCCTCAATTGATTCACCTTTTGCCCACTTTGAACAACGAGTGTTTGGAGATAGCTCTTCATATTCTCGAGGTTTTGTCGACGCTTCCTGAGGGAAGATTGGCTTTGAAGGAGTGTCCCAATATTATTCCCAATGTGGTCAAGTTGTTGATGAGAGTTTCGGAGAGTTGCACGCAATTCGCCTTGTCGATATTGTGGGCTATCTACAAGCTTGCCCCACAAGAATGTGCTTCCAAAGCTGTGGAGGCAGGGTTGGCGCCAAAGCTACTTCTAGTCATTCAGAGTGGTTGCAACCCCGTCCTCAAGCAGAAATCCGCAGAGTTTTTGAAAATGTGCAGTCTAGATTACTCTACTGGTATTTTGATTTCCAACTGTATGCTTACTGCAACCATACAATGA 1242 0.5201 MAGAKEGKALDLKTVICELESSTMEVPSVFVCPISLEAMQDPVTLCTGQTYERSNILKWFSLGHNTCPTTMQDLWDRSLTPNATLRHLILTWFSHKYSALTKTLHHLHATALHLLDTLTKVKGQNRVRALKHLRQLLDCHVSTRKTVLEHNALPLISSFLGPFTSHAVGSEVIGILVNLDLSSDFKKTLMQPSKVSLLVDIMNEGTLQTKMNCANLIQILFIEANASESHAEFLSSLSLLVGLLRLVRDKKHPTSVLTGLVLLNIVCSRESVRTSLVTLGAVPQLIHLLPTLNNECLEIALHILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPQECASKAVEAGLAPKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSTGILISNCMLTATIQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01788 413 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 5 412 - -
Cca03g01788 413 SUPERFAMILY RING/U-box 18 94 - -
Cca03g01788 413 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Cca03g01788 413 Gene3D - 259 410 IPR011989 -
Cca03g01788 413 Gene3D - 109 258 IPR011989 -
Cca03g01788 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 107 IPR013083 -
Cca03g01788 413 CDD RING-Ubox_PUB 30 72 IPR045210 -
Cca03g01788 413 SUPERFAMILY ARM repeat 113 396 IPR016024 -
Cca03g01788 413 Pfam U-box domain 26 96 IPR003613 GO:0004842|GO:0016567
Cca03g01788 413 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Cca03g01788 413 PANTHER WDSAM1 PROTEIN 5 412 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01788 Cca-Chr3 37087673 37089471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01788 8 413 U-box Gene Family AT3G49810 58.621 1.86e-166 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01788 - - gmx:100808281 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01788 03 37087673 37089471 Cca03g01788 03 37087673 37089471 ECH