Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01773 ATGGATCTTGGGGCTGTGGGCTTGGATGGGTTGGTGGGTTCGGACACTGCTACTGGCTTTGGTATCCCTCTTGCTTCAGATCCTGAAGCCAAGCACAAGTGGTATGGATCTGGGTTCCTAAAGCAGGAGAGATCTGGCGCCACTGAAGATGACTGGAGGAGTTCCAAACTGGCCAAGACTCATCATCATGATCACGGTGCTGACATTTCTGCTTCCAAACCAATGCTCTTCCACCACATGAACAACACCTCCCTACTCAGATCTAATGCTCCACAAATGCTCAGCTTCTCTTCTCAAAAATCGGAGCCTTTGGTACTGGACAAGGCATCCCCAAATGCCTCATTCCCTTATTCTCTCCACCATTTATCTAGTTACAACAGAAATACAGGTTTCAATTCCGGGAACATGCATGGGATTTTAGCGGGAGCAAGAGGGCCTTTCACTCCATCACAGTGGATGGAGCTAGAACACCAAGCCCTGATCTACAAGTACATAACAGCCAATGTCCCCGTTCCATCTCATCTCCTCATCCCCATCAAGAAAGCCCTCGAATCTGCTGGCTTCTACAACTTCTCACCCTGTCTCCTCCGAACCAACAATGCCATGGGATGGGGGGGTTTCCATCTGGGGTTCTCGAACAGCACAGATCCGGAGCCAGGAAGGTGCAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTGGATCAGAAGTACTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCGGGaccaccaccaccaccacTTCAAAGCTTGTCCCCACTAACAACCTCGTGGTGCCCGGAACCACTACTGCACCATCCTTTGCGCAACACCAACCCAAGAATATGCACCCTCTTGCATCTGATACTTCTGCTGCGCCTCCCAACATCAATAGGATGATTATGAATAACAAGGAGAATGGCAGTGAGAGAATAATCCCGGTCAGTGATGCACTTGCTGACCTGAAACCGAAGGAAAACCCCTTTGTGGTTCAAAAACAACAGATCCCATATGAAGAATCCTCAAGGAGTGAGTTTGGGGTTGTTACTTCTGATTCACTACTCAACCCTTCGCAGAAAAGTCCCACCTTGTTGAGTACAAGAATCTTTGGGTCTTCACACAGCGCAAGTAATAACCAAGAGAGTGATTCACAACATTCCCTTAGGCAATTCATGGATGACTGGCCCAAAACCCAGTCTAATCGGTCGTGGCAAGAGCTTGACATGCAATCAGATAGAACAGAACTATCGATTTCAATACCTATGACATCCTCAGATTTCATGTCATCCACTTCCTCCCCCACCAACGACAAAGTAACACTCTCACCTCTAAGATTATCAAGGGAGTTAGACCCTATTCAAATGGGTCTTGGAGTTGGGAATGCTATGAACGAATCAAACAGTGGTAGTAGGCAAGCTAATTGGATCCCAATTTTATGGGAGGGTTCAATGGGTGGTCCTCTTGGAGAGGTTTTGAATCTCAGCAATAACGGTGGAAATGACCAGTGTGCCAAGAACAATAACAATGCTCTCAACCTTATGAGTAATGGGTGGGACAATAGTCCCTCGTTAGGGTCTTCTCCCACTGGGATATTGCAAAAGACAGCGTTTGGATCTTTGTCAAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAATAAAACACAAGAAGGAGCAAGTTTGTGCAATGACCTCCTCGGTTCAACTCTAGGGAACCCTTCCTCTTTGCCTAAGTTGTAA 1797 0.4758 MDLGAVGLDGLVGSDTATGFGIPLASDPEAKHKWYGSGFLKQERSGATEDDWRSSKLAKTHHHDHGADISASKPMLFHHMNNTSLLRSNAPQMLSFSSQKSEPLVLDKASPNASFPYSLHHLSSYNRNTGFNSGNMHGILAGARGPFTPSQWMELEHQALIYKYITANVPVPSHLLIPIKKALESAGFYNFSPCLLRTNNAMGWGGFHLGFSNSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTGTTTTTTSKLVPTNNLVVPGTTTAPSFAQHQPKNMHPLASDTSAAPPNINRMIMNNKENGSERIIPVSDALADLKPKENPFVVQKQQIPYEESSRSEFGVVTSDSLLNPSQKSPTLLSTRIFGSSHSASNNQESDSQHSLRQFMDDWPKTQSNRSWQELDMQSDRTELSISIPMTSSDFMSSTSSPTNDKVTLSPLRLSRELDPIQMGLGVGNAMNESNSGSRQANWIPILWEGSMGGPLGEVLNLSNNGGNDQCAKNNNNALNLMSNGWDNSPSLGSSPTGILQKTAFGSLSNSSAGSSPRAENKTQEGASLCNDLLGSTLGNPSSLPKL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01773 598 PANTHER GROWTH-REGULATING FACTOR 9 26 577 - -
Cca03g01773 598 MobiDBLite consensus disorder prediction 249 281 - -
Cca03g01773 598 Pfam WRC 217 259 IPR014977 -
Cca03g01773 598 MobiDBLite consensus disorder prediction 45 68 - -
Cca03g01773 598 Pfam QLQ 146 179 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g01773 598 SMART QLQ_2 145 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g01773 598 MobiDBLite consensus disorder prediction 556 598 - -
Cca03g01773 598 ProSiteProfiles QLQ domain profile. 146 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g01773 598 MobiDBLite consensus disorder prediction 263 281 - -
Cca03g01773 598 ProSiteProfiles WRC domain profile. 216 260 IPR014977 -
Cca03g01773 598 PANTHER - 26 577 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01773 Cca-Chr3 36901314 36905213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01773 36 557 GRF Transcription Factor Family AT2G22840 42.048 3.66e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca03g01773 WRC 5.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01773 - - aprc:113865097 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01773 03 36901314 36905213 Cca03g01773 03 36901314 36905213 ECH