Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01772 ATGAATTCGAAGATGGATTCCGATAGAGCGAAACTGTTCGTAGGGGGCATTTCTCGGGACACCACCGAAGATGTTCTGAAATTCCACTTCGCCAAGTACGGCGTCGTTTTGGATTCCACAATCTCCGTAGACCGCACCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGATCTCTCCGCAGCCGATAAAGCACTTCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTGAAAAAAGCGATTCCCAGAAGTGAACAACAGCAACACCATAACCAATTACAGATTAGAGGAGGCGCTAATTATAGTAGTAGTAATGACTGTAGCAGTGACAACATTGTTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCCGCTGGTATATCTGAGGAGGAGTTTAAAAACTACTTTGAGAGGTTTGGTCGAATAACTGATGTGGTGGTGATGCAGGACAGTGTAACTCACCGGCCCAGGGGGTTTGGGTTCATCACTTTTGATTCCGAGGAATCGGTTCAAAACGTTATGGTCAAGAGTTTCCATGACTTGAATGGTAGACAGGTGGAGGTGAAGAGGGCTATTCCGAAAGAGGGGAACCATGGCGGCTATGATGGTTTTAGTAAATTAAGAAATACGGGTGAAAGAGGCGCCCCTAAAGGTTTTCCTCCTTATAGTCATAGGAACATGCTCCCAGGGTATGCACCTTTGCCTTGGTATAGTGGTGATGGAGTATATGGATACGGGTCTAACACGTATGGTTGCTGGTACCCTATGGGTGGGTATGGGGAAAATGGATATGCGGTTCCGTCTGATGCTTCTCGGAACTACTGGTATGGGCCAATGATAACTGGTCCTCAGGCATGTCATGTGCCTTATGCTAGTGCAGTTCCAAATGTTGCGTTTGTGGGGGGTAGGATTGGCATAGTAGGTAACGGTCCTGGGTCTTTGGGTTACAGTGGCATTCTTGGGTCTGCAACAAATTGGAAATTTGATCAACCTTTTAATGCCAACGGATTTGTTCCAGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTGTCGACTCTGCAAGTTTCAAAGGAAGCAATGGTGAAATTTCTAGTTGA 1116 0.4633 MNSKMDSDRAKLFVGGISRDTTEDVLKFHFAKYGVVLDSTISVDRTTRCPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQHHNQLQIRGGANYSSSNDCSSDNIVRTKKIFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAIPKEGNHGGYDGFSKLRNTGERGAPKGFPPYSHRNMLPGYAPLPWYSGDGVYGYGSNTYGCWYPMGGYGENGYAVPSDASRNYWYGPMITGPQACHVPYASAVPNVAFVGGRIGIVGNGPGSLGYSGILGSATNWKFDQPFNANGFVPGNVTSPHGVKQDVVDSASFKGSNGEISS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01772 371 SUPERFAMILY RNA-binding domain, RBD 4 108 IPR035979 GO:0003676
Cca03g01772 371 Gene3D - 1 97 IPR012677 -
Cca03g01772 371 Gene3D - 117 204 IPR012677 -
Cca03g01772 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Cca03g01772 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Cca03g01772 371 MobiDBLite consensus disorder prediction 90 106 - -
Cca03g01772 371 SMART rrm1_1 11 82 IPR000504 GO:0003723
Cca03g01772 371 SMART rrm1_1 121 193 IPR000504 GO:0003723
Cca03g01772 371 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 369 - -
Cca03g01772 371 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 369 - -
Cca03g01772 371 MobiDBLite consensus disorder prediction 86 106 - -
Cca03g01772 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Cca03g01772 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Cca03g01772 371 SUPERFAMILY RNA-binding domain, RBD 115 218 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01772 Cca-Chr3 36880152 36881834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01772 12 259 Eukaryotic Initiation Factors Gene Family AT2G36660 23.664 2.73e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01772 K14411 - gmx:100786665 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01772 03 36880152 36881834 Cca03g01772 03 36880152 36881834 ECH