Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01770 ATGGATGGTATTCAAAATGATATGGGGCTTCAACATGGAAACAAGGGGATTCTGAATTGTCCATTATCGGGTTTGAGGACAAGTGTTTCTGAAATGACAGTTAGTTCTGTGTTTAAGGCTATGCCTTCAGGTGTGACTAATCCTTTTCTAGATTCTTCTGCTTGGGATCCTCTTGCTCCATTGGGTCAAACTTTTGGAGGCTCTCTTAGTGAGTTTGTCGATTCATCTCACCCTCCTTTTGTTTTGGAAAACCAGGGAATAAGCAACGAGCCTCACCTTGTTCAATATATATCTGACTCAAATTTTGCTTGCATGGCCCCTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATTATATAGCTAACACAGGGTATCACCCAAATCATGATCCGTGTAATGAGCAATCTCAGGTTGAAGGTTCAACTTCTGAAGGAGTTGCACCTGGTGAACATAAAAGAAAGAGAGAACTTGTTTCCATTTCTACTTTCAGTCCAAATAAGAATGATGAGGGGGAAGCAGTTAAAGATTCTCCTGGAACGAGCTCTGATGATGTGAAGGAACAATATGTAAAGAAACCAAAAGTTGAACAAAACATTATTGCAAATTTCAGTGGAGAAGTTCCCAAGGAAAACTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACACTCACAGCCTTGCAGAAAGGATAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCGACAAGATAACAGGTAAAGCGCTGATGCTGGACGAGATTATAAACTATGTGCAATCACTGCAACAACAAGTTGAGCTTTTGTCCATGAAACTTGCCACTGTAAACCCAGAATTGAATTTTAATGTAGAGCAAATCTGCTCCAAAGATTCAAATATTGGACTTGGACCAATTGGTGGATATGGTTCTGGCATCAGCTGCACTCATCCATTTCCTTCTAGAAGTCTCCAGGGAGGCATGCCTAACCCATCAACACAATTTCCTCTTATGCCACCGGCTGTTTTGAACCAAAGCTTCGAGCTACAATTCCAGTACAGCTCTTGA 1074 0.4171 MDGIQNDMGLQHGNKGILNCPLSGLRTSVSEMTVSSVFKAMPSGVTNPFLDSSAWDPLAPLGQTFGGSLSEFVDSSHPPFVLENQGISNEPHLVQYISDSNFACMAPKVPSFGQTGSYYIANTGYHPNHDPCNEQSQVEGSTSEGVAPGEHKRKRELVSISTFSPNKNDEGEAVKDSPGTSSDDVKEQYVKKPKVEQNIIANFSGEVPKENFIHVRARRGQATNTHSLAERIRREKISERMRLLQELVPGCDKITGKALMLDEIINYVQSLQQQVELLSMKLATVNPELNFNVEQICSKDSNIGLGPIGGYGSGISCTHPFPSRSLQGGMPNPSTQFPLMPPAVLNQSFELQFQYSS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01770 357 MobiDBLite consensus disorder prediction 129 143 - -
Cca03g01770 357 CDD bHLH_AtBPE_like 211 296 - -
Cca03g01770 357 Pfam Helix-loop-helix DNA-binding domain 224 272 IPR011598 GO:0046983
Cca03g01770 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 271 IPR011598 GO:0046983
Cca03g01770 357 MobiDBLite consensus disorder prediction 169 188 - -
Cca03g01770 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 354 IPR024097 GO:0006355
Cca03g01770 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 290 IPR036638 GO:0046983
Cca03g01770 357 SMART finulus 227 277 IPR011598 GO:0046983
Cca03g01770 357 MobiDBLite consensus disorder prediction 129 188 - -
Cca03g01770 357 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 354 - -
Cca03g01770 357 Gene3D - 218 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01770 Cca-Chr3 36845327 36847444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01770 7 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.005 7.50e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01770 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01770 - - gmx:100787749 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01770 03 36845327 36847444 Cca03g01770 03 36845327 36847444 ECH