Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01759 ATGGGGTTTGATATCTCTATCCCAGGGCTTCGACTTGGTCTTGGTCTTGGCCTCCACGATCACGATGAACACAAGCAAAGACGTCAAAGGCAGAAGAAAAAGGAAGCGGATCCGTGTAATAAGGCTTATCCATCACTTACGTTAGGACCACCACCCGATGATGACGTCGAGGCAAATAATAATGAACCAATTTCAAAGACCGAATCCGATGAATATTATTATTTCCATCCACATGCGTCTTCTCCAAGTGCAGTGTCTTCGTTTTCCAACTCGTGTATCAAGAGAGATAGAGATCAGTTCGCGGGAGAAGAGGTTGAGAAGATTCTGTCAAGGGTTGTCGATGTCCATGAAAATGGTAACCCCAACAAGAAACTTAGGCTCACCAAACAACAATCTGCAATCTTGGAAGATAGCTTCAAACAGCATTCTACTCTCACTCCGAAACAGAAGCAAGAATTGGCAAAGAAGCTGAATCTGAGACCTAGACAAGTGGAGGTGTGGTTTCAAAATAGGAGAGCCAGGACAAAACTGAAAGAAACTGAAGTGGAGTGTGAGTTACTGAAAAAGTGGTGTGAAAGTCTAAGGGAAGAGAAGAAGATGCTGCAAAAAGAGTTGGAAGAACTTAAATTGATGAAAGCAAGGGTGGGAGTGGGACCCTATTATATGCAGCTTCCGGTGGCAAGCCTTACAATATGCCCCTCGTGTGACAAAATTTACGGTGGCAGCGGCGCTACCAAAAATGGCTCCTCTCCCACCACGCCTTTGCTTCTTGGGCCCAAGGCCCATCATAGCTTCTATAAAAGTAACTATACATTCACCCAATCATCCGCAGCATGCTAG 840 0.45 MGFDISIPGLRLGLGLGLHDHDEHKQRRQRQKKKEADPCNKAYPSLTLGPPPDDDVEANNNEPISKTESDEYYYFHPHASSPSAVSSFSNSCIKRDRDQFAGEEVEKILSRVVDVHENGNPNKKLRLTKQQSAILEDSFKQHSTLTPKQKQELAKKLNLRPRQVEVWFQNRRARTKLKETEVECELLKKWCESLREEKKMLQKELEELKLMKARVGVGPYYMQLPVASLTICPSCDKIYGGSGATKNGSSPTTPLLLGPKAHHSFYKSNYTFTQSSAAC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01759 279 SMART HOX_1 120 182 IPR001356 GO:0003677
Cca03g01759 279 Coils Coil 177 214 - -
Cca03g01759 279 CDD homeodomain 123 179 IPR001356 GO:0003677
Cca03g01759 279 PANTHER - 5 278 - -
Cca03g01759 279 SUPERFAMILY Homeodomain-like 116 179 IPR009057 -
Cca03g01759 279 MobiDBLite consensus disorder prediction 16 65 - -
Cca03g01759 279 MobiDBLite consensus disorder prediction 16 39 - -
Cca03g01759 279 Pfam Homeodomain 123 176 IPR001356 GO:0003677
Cca03g01759 279 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Cca03g01759 279 SMART halz 178 224 IPR003106 GO:0006355|GO:0043565
Cca03g01759 279 Gene3D - 115 184 - -
Cca03g01759 279 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 278 - -
Cca03g01759 279 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01759 Cca-Chr3 36690839 36692688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01759 93 238 Homeobox Transcription Factor Family AT4G37790 57.325 6.33e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca03g01759 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01759 K09338 - gmx:100790927 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01759 03 36690839 36692688 Cca03g01759 03 36690839 36692688 ECH