Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01758 ATGGAGGAATTCACTAATAATCACCTGAGCGAAAACACAAGTCCAAGGGCAAATTTGTTGTACTCCTTGGCTTGTGGTTCAAGTGTTGGAAATCGCCACCAACAGCTTCCATTCAACACCTTTCATCTTCAATCGGGTGGATCGGGTCACTGTTTTCAACCCGATCAAGTGAAAACCGAGTCCACCAACTTCCACTATCCTCTAATGAGTCCAAATCTTCAAGGAGGGACTCAGAGCTCTGACGAAATTGAAGCCATCAAAGCCAAAATCATTGCCCATCCTCACTACTTAAATCTTTTACAAGTTTACACGGATTGCCAAAAGGTGGGAGCTCCGCCAGAGGCGGTGGCGCGTTTGGCTGCGGTTCTGCAGGATTTTGAGGCACGGCAGCGATCTATGGTTAGGTCCAGGGAAAGTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGAGAGGAATTAACGAGGCCTATACAAGAGGCTATGGATTTCATGCGTGGGGTAGAAACTCAGCTCAACACGCTTTGCAATGGAACCGTGCGGATATTCTCTGAGGTTCACGAGAACAGTGGTGGAGAAACAGAAGTGGCCGAGATTGATCCCCAGGTGGAAGACCGTGAACTCAAAAGCCACTTGCTCAGGAAATACAGCGGTTACTTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAGAAAAAAGGAAAACTGCCCAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATTACACTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGCTGGCTGAAGCAACTGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAACGCCACTGGAAACCATCGGAAGACATGCAATTTATGGTTATGGATGGCCTACATTCACAGAACGCAACTCTCTATATGGATGGTCACTACTTAGCTGATGGCCATTACCGTTTAGGGCCATAA 1005 0.4587 MEEFTNNHLSENTSPRANLLYSLACGSSVGNRHQQLPFNTFHLQSGGSGHCFQPDQVKTESTNFHYPLMSPNLQGGTQSSDEIEAIKAKIIAHPHYLNLLQVYTDCQKVGAPPEAVARLAAVLQDFEARQRSMVRSRESCKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRGVETQLNTLCNGTVRIFSEVHENSGGETEVAEIDPQVEDRELKSHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHSQNATLYMDGHYLADGHYRLGP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01758 334 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Cca03g01758 334 Pfam KNOX1 domain 85 126 IPR005540 GO:0003677|GO:0005634
Cca03g01758 334 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Cca03g01758 334 SMART HOX_1 238 303 IPR001356 GO:0003677
Cca03g01758 334 Gene3D - 241 303 - -
Cca03g01758 334 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Cca03g01758 334 SUPERFAMILY Homeodomain-like 237 311 IPR009057 -
Cca03g01758 334 Pfam ELK domain 216 237 IPR005539 GO:0003677
Cca03g01758 334 CDD homeodomain 248 300 IPR001356 GO:0003677
Cca03g01758 334 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Cca03g01758 334 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Cca03g01758 334 Pfam KNOX2 domain 140 185 IPR005541 GO:0003677|GO:0005634
Cca03g01758 334 SMART KNOX1_2 84 128 IPR005540 GO:0003677|GO:0005634
Cca03g01758 334 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 56 326 - -
Cca03g01758 334 SMART ELK_2 216 237 IPR005539 GO:0003677
Cca03g01758 334 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01758 Cca-Chr3 36682448 36685877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01758 82 334 Homeobox Transcription Factor Family AT4G08150 72.862 2.43e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca03g01758 KNOX2 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01758 - - gmx:100798133 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01758 03 36682448 36685877 Cca03g01758 03 36682448 36685877 ECH