Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01756 ATGATTCCGAAGCTTGAGATCCCTCACTGGGACGCAGACGGAGGACCACTCTCCCCATTCTCTTTCTCTTCCGACCATTTCAGAATGTTCGAATTCAAGGTCAGGAACTGTCCACGTGGCAGGTCCCACGACTGGACCGACTGTCCCTACGCCCACCCCGCCGAGAAGGCCCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACCGCATGCCCCGATTACCGGAAGGGGAACTGCAACCGGGGCGACACCTGTCAGTTCGCGCACGGCGTTTTCGAATGCTGGCTCCACCCCTCGCGCTACCGGACCCAGCTCTGCAACGACGGAACCGCTTGCCGTCGCAGGGTCTGCTTCTTCGCACACACCACCGACCAACTCCGTCTCCTCACGCACTCCGAATCCTCCTCTCCCACTTCGGTTATCAACTCTTCCTTTTCGGACTCCCCTCCTTCTTCTCCTTCTCCCTATGCCTCCATGCGGAATGTCCAACTTCAACACTCTTTCACACGGGCCGTCTTTCGCTCCCCACGTGCCGCCTTATGGACCGTCAATGACTGCCACGAAGAGCCTCCTATGGAGAGGGTGGAGTCGGGCAGGGACATTAGAGCCAGAATCTATGCTAAACTTAGTATGGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTCCAACGTCACCACTCTTTCACACGTGCCGTCTTTCGCTCCCCACGTGCCGCCTTATGGACCGTCAATGACTGCCACGAAGAGCCTCCTATGGAGAGGGTGGAGTCGGGCAGGGACATTAGAGCCAGAATCTATGCTAAACTTAGTATGGAGAATTCTATTCGAACCTCAGCTCGTGATCAGTCATGA 897 0.5307 MIPKLEIPHWDADGGPLSPFSFSSDHFRMFEFKVRNCPRGRSHDWTDCPYAHPAEKARRRDPRKFLYSATACPDYRKGNCNRGDTCQFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTTDQLRLLTHSESSSPTSVINSSFSDSPPSSPSPYASMRNVQLQHSFTRAVFRSPRAALWTVNDCHEEPPMERVESGRDIRARIYAKLSMEXXXXXXXXXXXXXXXXXXXXXXNVQRHHSFTRAVFRSPRAALWTVNDCHEEPPMERVESGRDIRARIYAKLSMENSIRTSARDQS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01756 298 Coils Coil 207 213 - -
Cca03g01756 298 PANTHER UNKEMPT FAMILY MEMBER 259 296 IPR045234 -
Cca03g01756 298 PANTHER UNKEMPT FAMILY MEMBER 21 157 IPR045234 -
Cca03g01756 298 PANTHER UNKEMPT FAMILY MEMBER 184 214 IPR045234 -
Cca03g01756 298 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 91 IPR000571 GO:0046872
Cca03g01756 298 SUPERFAMILY CCCH zinc finger 65 95 IPR036855 GO:0046872
Cca03g01756 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 259 296 - -
Cca03g01756 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 21 157 - -
Cca03g01756 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 184 214 - -
Cca03g01756 298 ProSiteProfiles Zinc finger C3H1-type profile. 66 93 IPR000571 GO:0046872
Cca03g01756 298 MobiDBLite consensus disorder prediction 140 159 - -
Cca03g01756 298 Coils Coil 236 236 - -
Cca03g01756 298 Gene3D - 66 129 - -
Cca03g01756 298 SMART c3hfinal6 66 92 IPR000571 GO:0046872
Cca03g01756 298 SMART c3hfinal6 101 124 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01756 Cca-Chr3 36660878 36661774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01756 22 170 C2H2 Transcription Factor Family AT5G12850 54.375 1.97e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca03g01756 zf-CCCH 2.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01756 - K23048 gmx:100786368 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01756 03 36660878 36661774 Cca03g01756 03 36660878 36661774 ECH