Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g01756 | ATGATTCCGAAGCTTGAGATCCCTCACTGGGACGCAGACGGAGGACCACTCTCCCCATTCTCTTTCTCTTCCGACCATTTCAGAATGTTCGAATTCAAGGTCAGGAACTGTCCACGTGGCAGGTCCCACGACTGGACCGACTGTCCCTACGCCCACCCCGCCGAGAAGGCCCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACCGCATGCCCCGATTACCGGAAGGGGAACTGCAACCGGGGCGACACCTGTCAGTTCGCGCACGGCGTTTTCGAATGCTGGCTCCACCCCTCGCGCTACCGGACCCAGCTCTGCAACGACGGAACCGCTTGCCGTCGCAGGGTCTGCTTCTTCGCACACACCACCGACCAACTCCGTCTCCTCACGCACTCCGAATCCTCCTCTCCCACTTCGGTTATCAACTCTTCCTTTTCGGACTCCCCTCCTTCTTCTCCTTCTCCCTATGCCTCCATGCGGAATGTCCAACTTCAACACTCTTTCACACGGGCCGTCTTTCGCTCCCCACGTGCCGCCTTATGGACCGTCAATGACTGCCACGAAGAGCCTCCTATGGAGAGGGTGGAGTCGGGCAGGGACATTAGAGCCAGAATCTATGCTAAACTTAGTATGGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTCCAACGTCACCACTCTTTCACACGTGCCGTCTTTCGCTCCCCACGTGCCGCCTTATGGACCGTCAATGACTGCCACGAAGAGCCTCCTATGGAGAGGGTGGAGTCGGGCAGGGACATTAGAGCCAGAATCTATGCTAAACTTAGTATGGAGAATTCTATTCGAACCTCAGCTCGTGATCAGTCATGA | 897 | 0.5307 | MIPKLEIPHWDADGGPLSPFSFSSDHFRMFEFKVRNCPRGRSHDWTDCPYAHPAEKARRRDPRKFLYSATACPDYRKGNCNRGDTCQFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTTDQLRLLTHSESSSPTSVINSSFSDSPPSSPSPYASMRNVQLQHSFTRAVFRSPRAALWTVNDCHEEPPMERVESGRDIRARIYAKLSMEXXXXXXXXXXXXXXXXXXXXXXNVQRHHSFTRAVFRSPRAALWTVNDCHEEPPMERVESGRDIRARIYAKLSMENSIRTSARDQS | 298 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g01756 | 298 | Coils | Coil | 207 | 213 | - | - | |
Cca03g01756 | 298 | PANTHER | UNKEMPT FAMILY MEMBER | 259 | 296 | IPR045234 | - | |
Cca03g01756 | 298 | PANTHER | UNKEMPT FAMILY MEMBER | 21 | 157 | IPR045234 | - | |
Cca03g01756 | 298 | PANTHER | UNKEMPT FAMILY MEMBER | 184 | 214 | IPR045234 | - | |
Cca03g01756 | 298 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 70 | 91 | IPR000571 | GO:0046872 | |
Cca03g01756 | 298 | SUPERFAMILY | CCCH zinc finger | 65 | 95 | IPR036855 | GO:0046872 | |
Cca03g01756 | 298 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 259 | 296 | - | - | |
Cca03g01756 | 298 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 21 | 157 | - | - | |
Cca03g01756 | 298 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 184 | 214 | - | - | |
Cca03g01756 | 298 | ProSiteProfiles | Zinc finger C3H1-type profile. | 66 | 93 | IPR000571 | GO:0046872 | |
Cca03g01756 | 298 | MobiDBLite | consensus disorder prediction | 140 | 159 | - | - | |
Cca03g01756 | 298 | Coils | Coil | 236 | 236 | - | - | |
Cca03g01756 | 298 | Gene3D | - | 66 | 129 | - | - | |
Cca03g01756 | 298 | SMART | c3hfinal6 | 66 | 92 | IPR000571 | GO:0046872 | |
Cca03g01756 | 298 | SMART | c3hfinal6 | 101 | 124 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g01756 | Cca-Chr3 | 36660878 | 36661774 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g01756 | 22 | 170 | C2H2 Transcription Factor Family | AT5G12850 | 54.375 | 1.97e-52 | 181 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca03g01756 | zf-CCCH | 2.7e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g01756 | - | K23048 | gmx:100786368 | 315.849 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g01756 | 03 | 36660878 | 36661774 | Cca03g01756 | 03 | 36660878 | 36661774 | ECH |