Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01749 ATGATTGCTATATATTCGGTCCTTAAATTCGTGAGTGTCAGACTTATTTCATCTCTTGAATATAATAAAGTAGAAGAGAAAAGTCTCCAAGTTGGAATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGAAGCGCCTGAAGAAGCTCGTGATGAAAACGTGATAGTGTTTAAAGCAAGCAAGGTTCTAAGCGAGACTCGGGGACTTTGCTCTGCTTACTCTAAACAAGGTAGCAAAGGACTTAACCAAGATGCTGCTACTATTTCTCAGGGTTATGGGAAGGAAAAGGCAGCATTTTGCGGCGTTTTCGATGGCCATGGAAGGAACGGTCACTTAGTGAGCACAATAGTAAACAGCCGTTTGTCTTCACTCATACTGAACCAAAAGAACGTGCATGGAAAGATTGACACGATGGAAAAGGGTGATGATAAAAACATCCTTAACCATGTGGACACGGTTGAAGAAGATTCGTCTCCAAATAAGAATTTTCAGGAATGGAAAGAAGCTATTATTGGCGCTTTCAGGGTGATGGACAAGGAGTTGAAGCTGCAAGAGAATCTAGATTGCTCTTGTAGTGGAACTACTGCTGTAGTTGTCATAAGAGAGGGTGAAGATCTTGTCATAGCTAACCTTGGTGATTCAAGAGCAGTCTTGGGCACAATCTGTGACGGTGAAATCATACCCGTTCAATTGACCACAGATATGAAACCTGGATTACCTCGCGAAGCGGATCGAATAAGAAGTTGCAATGGCCGTGTATTTGCACTAAAGGAAGAACCACACATCCAGCGAGTGTGGTTACCTAATGAGAACTCCCCAGGTTTAGCCATGTCTCGAGCTTTTGGAGATTTTATGCTCAAAGACCACGGTATCATTGCCATCCCAGATATTTCGTTTCTCACTCTAACATCCAAGGACCAGTTTATTGTACTTGCAAGTGATGGGGTATGGGATGTATTAAGCAATAAGGAGGTTTCCTCAATCGTGTGGGAGGTAAACAGTGAAAGGGAAGCAGCAAGGGCAGTAGTGGAAGCAGCAACCGCAGCATGGAAACACAAGTATCCTTCTTCTAAGGTTGATGACTGCACTGTGGTTTGTCTCTTCTTCCAGAAGAAACAACAGCTCTTATCCGTGAAAAGTGGAAATCCCTGA 1158 0.4318 MIAIYSVLKFVSVRLISSLEYNKVEEKSLQVGMGICISSESSAIHEAPEEARDENVIVFKASKVLSETRGLCSAYSKQGSKGLNQDAATISQGYGKEKAAFCGVFDGHGRNGHLVSTIVNSRLSSLILNQKNVHGKIDTMEKGDDKNILNHVDTVEEDSSPNKNFQEWKEAIIGAFRVMDKELKLQENLDCSCSGTTAVVVIREGEDLVIANLGDSRAVLGTICDGEIIPVQLTTDMKPGLPREADRIRSCNGRVFALKEEPHIQRVWLPNENSPGLAMSRAFGDFMLKDHGIIAIPDISFLTLTSKDQFIVLASDGVWDVLSNKEVSSIVWEVNSEREAARAVVEAATAAWKHKYPSSKVDDCTVVCLFFQKKQQLLSVKSGNP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01749 385 SUPERFAMILY PP2C-like 62 372 IPR036457 -
Cca03g01749 385 Pfam Protein phosphatase 2C 94 350 IPR001932 -
Cca03g01749 385 SMART PP2C_4 58 369 IPR001932 -
Cca03g01749 385 Gene3D - 55 375 IPR036457 -
Cca03g01749 385 ProSiteProfiles PPM-type phosphatase domain profile. 71 371 IPR001932 -
Cca03g01749 385 CDD PP2Cc 72 333 IPR001932 -
Cca03g01749 385 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 33 376 - -
Cca03g01749 385 PANTHER ALPHABET, ISOFORM E-RELATED 33 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01749 Cca-Chr3 36592034 36593963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01749 33 376 PP2C-type Phosphatase Gene Family AT5G26010 52.707 1.54e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01749 - - gmx:100795893 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01749 03 36592034 36593963 Cca03g01749 03 36592034 36593963 ECH
Cca05g00856 05 23323624 23326542 Cca03g01749 03 36592034 36593963 PCT