Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01744 ATGCTGATGGAGACTGATATGTACATTGCTGGCCGAGATGCTACAGTAACAGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAATCAAACCAACATCATAAATGGAATTCCAATGCTTTCTGGAGAGCAAGATGCTTCAAATCCCATGGAGAACAGTGAGCTTCAAGAGAATTTAGTTGGAGGAATGCCAATTACTCCCTCTTCCCTTGCTGCCATTCTCGCTGCTAGAATTGGTCTTGAAGAAAATTTAGAGAACTCAGAAGCCTTGCCTCCCGCACTCTGCTCAATGGGGCCACTGGCGCCATTCTTCAACATTTTGCATGGTTCTTCAAACCCTTTGGCTGCAGCTTTTGAGGACTGTGGTTACAATGAAGTCCCTAGCAAGTGGAATGCTAACAAGTTTCCTAAGACTCCAGAGATTGATGCAACTGTGTGTCAGCCTTATTCTTCAATAGTAGGAAACCTGGATCCAGATGAATGGCCATTATCAAATGTTGCAAACATGTCCAATCATGCTTACCATTCCTCTAACTTTAGCAAGGAACTTTCTCTAAGTCTTGCATCGTCTACAACCGCAGGACAGTGCTCAGAGGTGAGTTGCTCTAATGTGACCCCATGCATGAATGGAACCATGTCAGGCTTGGAACAAGCCTCATGCAGCAGCAGTAGGGAGCTTTCTATGAATTTGGGTGGTAATAAATATGTACAGTTTTCACCAGAAGTACTGGAGTCAAGATACCTTGTTGGGATTCAAGAAATACTTGCTCAAATTGCAAGATATTCATTTGAAAATTTAGAACAGTTAAATTATTCAGCTGCTGCTAATAGATCAGGTGGGAACAAGTCAACTTCAGCTTTCCCACTCAAGAGAAGGATACTGATAGATCACAATGCAAATTCCGTGTATGAAACTCATGCAGAGTCTCCATTACAAAGGCATGCCACTGAATCAAAGAAAGCCCAATTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACACACTGTTGTATCGGCATTCCATGCCGCTACAGAGCTGGACCCGCAAATACATTCACATTTTGCTCTTCAGACCATCTCTATCCTTTACAGGGACTTAAGAGAGAGGATTAGCAATTATATTCTTGCCATGGGATCAAGTTTCGACAACTCTTTCTCAGAAGAGAATGAATGGTCTGTTGAAACTTCATTCCTTCAAAAGCAATGGGCACTCCAGCAGTTGAAAAGAAAAGATCAGTTGTGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGGGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCGAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAGATGAATAAAAGAAAGGCTTGTCGGAATGAAGAAGGATTGCAGAGCAGCCACGGAAACAGGATAAGCATCAGTAATCAAAGGTTTAATGTAAACTAA 1596 0.4229 MLMETDMYIAGRDATVTDEISQHSTSNPLIQCYSLDLNNQTNIINGIPMLSGEQDASNPMENSELQENLVGGMPITPSSLAAILAARIGLEENLENSEALPPALCSMGPLAPFFNILHGSSNPLAAAFEDCGYNEVPSKWNANKFPKTPEIDATVCQPYSSIVGNLDPDEWPLSNVANMSNHAYHSSNFSKELSLSLASSTTAGQCSEVSCSNVTPCMNGTMSGLEQASCSSSRELSMNLGGNKYVQFSPEVLESRYLVGIQEILAQIARYSFENLEQLNYSAAANRSGGNKSTSAFPLKRRILIDHNANSVYETHAESPLQRHATESKKAQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHSHFALQTISILYRDLRERISNYILAMGSSFDNSFSEENEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGLQSSHGNRISISNQRFNVN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01744 531 CDD homeodomain 432 493 IPR001356 GO:0003677
Cca03g01744 531 Pfam Homeobox KN domain 449 488 IPR008422 GO:0003677|GO:0006355
Cca03g01744 531 Pfam Associated with HOX 252 389 IPR006563 -
Cca03g01744 531 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 528 - -
Cca03g01744 531 PANTHER HOMEOBOX PROTEIN ATH1 38 528 - -
Cca03g01744 531 SMART HOX_1 432 496 IPR001356 GO:0003677
Cca03g01744 531 ProSiteProfiles 'Homeobox' domain profile. 429 492 IPR001356 GO:0003677
Cca03g01744 531 Gene3D - 435 514 - -
Cca03g01744 531 SMART prehox3 246 390 IPR006563 -
Cca03g01744 531 SUPERFAMILY Homeodomain-like 434 501 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01744 Cca-Chr3 36550646 36553021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01744 157 505 Homeobox Transcription Factor Family AT4G32980 53.409 2.92e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca03g01744 POX 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01744 - - gmx:100820354 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01744 03 36550646 36553021 Cca03g01744 03 36550646 36553021 ECH
Cca05g00847 05 23147445 23150156 Cca03g01744 03 36550646 36553021 PCT