Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01741 ATGGGAATAGCTAGGAAATGTTCATATTGTGGTAACTTGGGTCACAATGCAAGGACTTGTAAAAGTCTCAGTCACGGACAACCAAAGCTGTTCGGAGACCAACTTGGTGGTTATTATTCTTCATCGTTACCTTCCTATTCTGCCACAAAAATAAGTCTCAGCCCCAACAACTTGTTCTCTTCCCATGTGTCCTCCTCCTTTTCCTTGCCTCCCCTGCTTCCTGCAAATCATAATTCAGATAGTTACTTCCAACACACAAAAAAAGGTGTGCCGTGGACAGAGGAGGAACATCGGATATTTCTTGTAGGGCTTGAAAAGCTGGGGAAGGGAAACTGGAGAGACATATCTAGAAATTTTGTGACAACAAGAACGCCTACCCAAGTTGCCAGTCACGCACAAAAATATTTTCTCCGTCAATCAAACAATACCTTCAATAGAACAAAACATTCTTCCACCCTATTCCATTGGCTTTCGCATCCTCATTCAGCATTGAATTGGCCTACCACTTCAACTGATTGCACTCTCCAGAGCGCGTCCCTAGATTTAGAACTTAAACTTGCAACTCCCAAGCCATTGGAGCTGGTAGATGCATACTCTGCAGGCCTTTCTAAGTTAACCACTAGTGTGTAA 630 0.4333 MGIARKCSYCGNLGHNARTCKSLSHGQPKLFGDQLGGYYSSSLPSYSATKISLSPNNLFSSHVSSSFSLPPLLPANHNSDSYFQHTKKGVPWTEEEHRIFLVGLEKLGKGNWRDISRNFVTTRTPTQVASHAQKYFLRQSNNTFNRTKHSSTLFHWLSHPHSALNWPTTSTDCTLQSASLDLELKLATPKPLELVDAYSAGLSKLTTSV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01741 209 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Cca03g01741 209 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 158 - -
Cca03g01741 209 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 139 IPR006447 GO:0003677
Cca03g01741 209 Gene3D - 92 141 - -
Cca03g01741 209 ProSiteProfiles Myb-like domain profile. 91 136 IPR001005 -
Cca03g01741 209 ProSiteProfiles Zinc finger CCHC-type profile. 5 22 IPR001878 GO:0003676|GO:0008270
Cca03g01741 209 SMART sant 88 138 IPR001005 -
Cca03g01741 209 CDD SANT 91 136 IPR001005 -
Cca03g01741 209 ProSiteProfiles SANT domain profile. 92 140 IPR017884 -
Cca03g01741 209 PANTHER TRANSCRIPTION FACTOR KUA1 4 158 - -
Cca03g01741 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 140 IPR017930 -
Cca03g01741 209 SUPERFAMILY Homeodomain-like 84 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01741 Cca-Chr3 36529919 36531630 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g01741 Myb_DNA-binding 4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01741 - - gmx:100806176 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01741 03 36529919 36531630 Cca03g01741 03 36529919 36531630 ECH