LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01730	ATGAAGGGAGTCACGGTGAAAGAAGAAGAAACAATGGCCTACGCACCTTCTGCTTCCTCTTCATCCACACCTTCAAACCTCTCTccgcaacccatggaaggcttgcacgaggttggtccccctccgtttctcaccaaaaccttcgacgtcgttgaagacccatccaccgacgacgtcgtttcatggagcagagcgcgcaacagtttcgtcgtttgggactctcacaggttctccaccaccatcctccctcgctacttcaagcacaacaatttctccagcttcgtccgacaactcaacacctacGGTTTTAGGAAAGTTGATCCGGATAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGGCAGAGGCACTTGTTGAAGACGATCAAGAGGAGGAGGCACGTGACACAGACGCAGTCACGTGAGGGAGGGGGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGGTTGGAAGGTGAGATTGATAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGACAGCTACAGCATAACTCAAGGGAGCAATTGTTGGGCATGGAGACTAGGTTGCAAGCCACTGAGAAGAAGCATCAACAGATGATGACTTTTCTAGCTAAAGCACTCAACAATCAGGCTTTCATTCAGCAGTTTCTTCACAGGAATGCACAGAGCATTGAGTTGCAGGGTGCGAGAAGGAAGAGGAGACTAACTAATTCCCCCAGTGTGGAGAATTTGCAGGAAGATCCTGTAATAATTGAAGAAGGGTCGGCTACTATTGAGTCGCAGATGGAGTCTTTTTTCTCTGCTGCTTGTGATGATGAATCCAGCACTGAAATAAAGGATTCAATGTTGAGTACAGTTCCAACTGCAGGTGGGAGCAATTTCGGGGAGGTGAGTGATGCTATTTGGGAGGACTTGCTGAACCAGGATTTGGTTGCCGGGGATCCCGAGGATGAAGTTGTGATGGATGACTTTTCACAAATTGATGTGCCTGTGGAGGATTTGGTAACCAAGACTGATGATGAATGGAATGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGGGTCCAAACCCTAG	1101	0.3787	MKGVTVKEEETMAYAPSASSSSTPSNLSPQPMEGLHEVGPPPFLTKTFDVVEDPSTDDVVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTQTQSREGGGGACVELGEFGLEGEIDRLRRDRTVLMAEIVRLRQLQHNSREQLLGMETRLQATEKKHQQMMTFLAKALNNQAFIQQFLHRNAQSIELQGARRKRRLTNSPSVENLQEDPVIIEEGSATIESQMESFFSAACDDESSTEIKDSMLSTVPTAGGSNFGEVSDAIWEDLLNQDLVAGDPEDEVVMDDFSQIDVPVEDLVTKTDDEWNEDLQNLVDHMGYLGSKP	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01730	366	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	316	IPR027725	-
	Cca03g01730	366	MobiDBLite	consensus disorder prediction	14	30	-	-
	Cca03g01730	366	Coils	Coil	160	180	-	-
	Cca03g01730	366	Pfam	HSF-type DNA-binding	43	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca03g01730	366	SUPERFAMILY	"Winged helix" DNA-binding domain	39	132	IPR036390	-
	Cca03g01730	366	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	17	316	-	-
	Cca03g01730	366	SMART	hsfneu3	39	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca03g01730	366	MobiDBLite	consensus disorder prediction	1	33	-	-
	Cca03g01730	366	ProSitePatterns	HSF-type DNA-binding domain signature.	82	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca03g01730	366	Gene3D	-	36	133	IPR036388	-
	Cca03g01730	366	PRINTS	Heat shock factor (HSF) domain signature	43	66	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca03g01730	366	PRINTS	Heat shock factor (HSF) domain signature	81	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca03g01730	366	PRINTS	Heat shock factor (HSF) domain signature	94	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g01730	Cca-Chr3	36421345	36423592	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g01730	29	366	HSF	AT2G26150	53.079	9.21e-122	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Cca03g01730		HSF_DNA-bind	2.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01730	K09419		-	gmx:100794605	612.453