Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01728 ATGGTGTTGATGGATTTGGAAGGGTTATATGCTTCACCAATGTTCACTCTTGTTGCTTTAATAGGAGGATTGTTGGTATATCTGTATGCACCCTATTGGGGGGTAAGGAAGGTTCCAGGCCCACCATCTCTCCCGTTTGTAGGACACCTTCCCTTGTTGGCTAGGTATGGCCCTGATGTGTTCTCAGTCCTCGCCAAGCAATACGGTCCAATTTACAGATTCCATATGGGAAGACAGCCATTAATAATTGTGGCAGATGCAGAGCTTTGTAAAGAGGCTGGGATCAAAAAATTCAAAGACATTACAAACAGAAGTATCCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCACTCGGGATTCGCAATGGTCTACGATGCGAAACACTATATTATCAATGTACCAGCCATCACACTTGTCCAGATTAGTGCCAACAATGCAGTCATTCATAGAATCTGCGACCCAAAGCCTTGACTCTCAAAAAGAAGACATCATTTTTTCCAACCTATCCTTAAGACTAGCAACTGATGTGATTGGACAGGCAGCATTTGGTGTAAACTTTGGCCTCTCTAGACCCCATTCCATTTGTGATTCCATCAAGAGTGTTAATGTTAACAATGACAATGCAAGTGCTAGTGATGATAATGAAGTATCAGATTTCATCAACCAACACATATACTCCACAACACAACTTAAGATGGACTTGTCTGGTTCCTTATCCATTATATTGGGTCTGCTTGTGCCAATACTTCAGGAGCCTTTTAGGCAGATTCTAAAGAGAATACCTGGCACCATGGACTGGAAGATTGAACGCACCAACCAGAAACTGAGTGGTCGTCTTGATGAGATTGTTGAAAAGAGAATGAAAGATAGGAGCCGAAGTTCAAAGGACTTCTTGTCACTCATACTTAATGCTAGAGAAACAAAAGCAGTTTCAGAGAATGTGTTCACACCTGACTACATTAGTGCTGTTACTTACGAGCACCTACTTGCTGGCTCAGCAACCACCTCCTTTACCTTGTCTTCTGTTGTCTATTTGGTTGCTGGACATCCTCAGGTTGAGAACAAGTTGCTTCAAGAGATTGATTCCTTTGGTCCAGTAGATCAAATACCCACTTCTCAAGACCTTCATGACAAGTTTCCTTACCTTGATCAGGTGATCAAAGAAGCCATGAGGTTTTACACTGTCTCCCCATTAGTTGCAAGAGAAACATCAAATGAAGTAAAAATTGGGGGCTATCTTCTTCCAAAGGGGACTTGGGTGTGGTTAGCGCTTGGAGTTGTAGGAAAAGATCCCATAAACTTTCCAGAGCCAGAAAAGTTCAAACCAGAAAGGTTTGACCCCAACTGTGAAGAAATGAAACGTAGGCATCCATATGCTTTTATACCATTTGGAATTGGTCCTCGTGCTTGCATTGGTAAAAACTTTTCCCTACAAGAGATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCTACAAGAGATCAAGCTTTCTCTGATTCATTTATATCGGAAATACTTGTTCCGCCATTCACCCAACATGGAAAACCCCTTAGAACTCGAGTATGGGATAGTCCTGAATTTCAAGCATGGGGTCAAGCTCAGAGCCATCAAAAGAACACAGAGATGCTAAGCAAACGGTTAAGATATTGCTCATACTACTACAGTCTCCAGACTTCAGAAGATCAATTATATGTATTATCTTACAAATATTAA 1740 0.4109 MVLMDLEGLYASPMFTLVALIGGLLVYLYAPYWGVRKVPGPPSLPFVGHLPLLARYGPDVFSVLAKQYGPIYRFHMGRQPLIIVADAELCKEAGIKKFKDITNRSIPSPISASPLHQKGLFFTRDSQWSTMRNTILSMYQPSHLSRLVPTMQSFIESATQSLDSQKEDIIFSNLSLRLATDVIGQAAFGVNFGLSRPHSICDSIKSVNVNNDNASASDDNEVSDFINQHIYSTTQLKMDLSGSLSIILGLLVPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKRMKDRSRSSKDFLSLILNARETKAVSENVFTPDYISAVTYEHLLAGSATTSFTLSSVVYLVAGHPQVENKLLQEIDSFGPVDQIPTSQDLHDKFPYLDQVIKEAMRFYTVSPLVARETSNEVKIGGYLLPKGTWVWLALGVVGKDPINFPEPEKFKPERFDPNCEEMKRRHPYAFIPFGIGPRACIGKNFSLQEIKLXXXXXXXXXXFPTRDQAFSDSFISEILVPPFTQHGKPLRTRVWDSPEFQAWGQAQSHQKNTEMLSKRLRYCSYYYSLQTSEDQLYVLSYKY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01728 579 Pfam Cytochrome P450 39 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 Gene3D Cytochrome P450 26 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 389 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PANTHER THROMBOXANE-A SYNTHASE 10 489 - -
Cca03g01728 579 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Cca03g01728 579 PANTHER CYTOCHROME P450 FAMILY PROTEIN 10 489 - -
Cca03g01728 579 PRINTS P450 superfamily signature 336 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca03g01728 579 SUPERFAMILY Cytochrome P450 31 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01728 Cca-Chr3 36383476 36392735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01728 76 488 Cytochrome P450 AT2G26170 74.334 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01728 K20771 - gmx:100797803 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00817 05 22546633 22551392 Cca03g01728 03 36383476 36392735 PCT