Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01727 ATGGGTGCCTCAGGAAAGTGGGTTAAGGCATTGATCGGACTCAAGAAACCAGAGAAAGATGAACATGTGAAGGAGGGTGGTAAGAGCAAGAAGTGGAGGCTATGGAGGAGTTCTTCCGGGGACATGGGTTCTTGGAAGGGTTTCAAAGGAAGCCACAAAGCAGCTTCTGAAGGTTCTGATTCTCCACCTGTTGTTTCAGATGCTTTCACAGCCGCAGTAGCCACTGTGGTTCGAGCTCCACCTAAGGATTTCAGACTAGTTAAGCAAGAATGGGCCGCTATAAGGATCCAAACCGCTTTCCGTGCCTTCTTGGCAAGAAGGGCTCTGAGGGCATTGAAGGGAGTGGTGAGGATTCAAGCTCTTGTGAGGGGAAGACAGGTGAGGAAGCAGGCTGCGGTGACATTGAGGTGCATGCAGGCCTTGGTTCGAGTTCAGGCTCGAGTAAGAGCTCGTCGTGTGAGGATGTCCATAGAGGGCCAAGCCGTGCAGAACATTCTTAATGAGAGACGCGGCAAGCTTGAACTTTTGAAGCAAGCTGAGGAAGGATGGTGTGACAGCAGAGGGACGTTGGAAGATGTTAAAGCCAAGATACAAATGAGGCAAGAGGGAGCTTTCAAAAGGGAAAGAGCAATTGCAGCAATTGCGTACTCTCTTGCTCAAAAGCAATGCAGATCAACACCAAGCTCCAATTCAAGAACAAATGCCTATTTTTCCTCTCTGAAGAGTAATGAGATTAACAAAGCTAATTGGGGGTGGAGTTGGTTGGAGCGTTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAACAGTCTCAGAATGAAGGTTTAGATAAAACCCCACCTCCAAAGAAGTTTGTGGAATCCTTTGTGAGCTCTAATTCCAAAACATGCTTGGTCAAAGTCAAGAAGAATAACATTACAACAAGGGTTTCTGCTAGGCCTCCCCATGTTGTTGGCCATGCTACTCGTTCATCCTCAAGTCCAAGTTCTGAGTTTAGGTATGATGAGAGTTCTGCATCATCCTCCATGTGTACTTCTACCACCCCAATGTCTGGGAACACTTGTGACAGGACTGAGGATGGTGGTGGCAATGCTAGGCCTAGTTACATGAACCTTACTCAATCCACAAAGGCAAAGCAAAAGACAAGTAATCATGTGTATAATAGAGCTCAGAGGCAGCAGTCTATGGATGAGTTTCAATTTCTCAAGAGGACAGCGGTTTTCTCTAATGGAGATTCCAAAAGCACTGCTGGTTCTGACCCTTCAATAAACTTTTCTAGGCCACTTCACTTGGACAAGAGCTCAGTGATGGCACGGTGA 1323 0.4717 MGASGKWVKALIGLKKPEKDEHVKEGGKSKKWRLWRSSSGDMGSWKGFKGSHKAASEGSDSPPVVSDAFTAAVATVVRAPPKDFRLVKQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQNILNERRGKLELLKQAEEGWCDSRGTLEDVKAKIQMRQEGAFKRERAIAAIAYSLAQKQCRSTPSSNSRTNAYFSSLKSNEINKANWGWSWLERWMAAKPWESRLMEQSQNEGLDKTPPPKKFVESFVSSNSKTCLVKVKKNNITTRVSARPPHVVGHATRSSSSPSSEFRYDESSASSSMCTSTTPMSGNTCDRTEDGGGNARPSYMNLTQSTKAKQKTSNHVYNRAQRQQSMDEFQFLKRTAVFSNGDSKSTAGSDPSINFSRPLHLDKSSVMAR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01727 440 MobiDBLite consensus disorder prediction 411 440 - -
Cca03g01727 440 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Cca03g01727 440 MobiDBLite consensus disorder prediction 368 389 - -
Cca03g01727 440 MobiDBLite consensus disorder prediction 321 359 - -
Cca03g01727 440 PANTHER IQ-DOMAIN 5-RELATED 1 439 - -
Cca03g01727 440 MobiDBLite consensus disorder prediction 310 389 - -
Cca03g01727 440 Coils Coil 438 440 - -
Cca03g01727 440 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Cca03g01727 440 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01727 Cca-Chr3 36380932 36382974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01727 1 430 IQD Protein Family AT2G26180 61.521 2.08e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01727 - - gmx:100799714 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01727 03 36380932 36382974 Cca03g01727 03 36380932 36382974 ECH
Cca05g00816 05 22543946 22546179 Cca03g01727 03 36380932 36382974 PCT