Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01720 | ATGCGAGCACTAGGGGACTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAAGATCAACGCATCCTCTCAAGTGGGGTTCATGTTGTTGTTGGTACACCTGGTCGTGTATTTGACATGCTGCGTAGGCAATCTTTGCGCCCTGATAACATCAAGATGTTTGTATTGGATGAAGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGTTGCCACCTAAGATCCAGGTTGGAGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAATTTATGAACaaacctgtgaggattctggtaaaacgtgatgagcttaccttggagggaattaagcaattttttgtcaatgtagataaggaggaatggaagctcgagacactatgtgatctttatgaaactttggcaatcactcagagtgttatctttgtgaacaccagacgcaaggtaGATTGGCTCACAGACAAAATGCGGGGTCGTGATCACACAGTTTCAGCTACTCATGGAGATATGGACCAAAACACAAGGGATATAATTATGCGGGAATTCCGTTCTGGGTCCTCCCGTGTTCTTATTACCACAGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTTATAAATTATGATCTGCCAACTCAGCCAGAGAACTATCTTCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAAGGATGATGAAAGGATGCTGTTGGACATCCAAAAGTTTTATAATGTTGTGATCGAGGAGCTGCCAGCCAATGTAGCTGATCTCATTTGA | 861 | 0.3612 | MRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLLDIQKFYNVVIEELPANVADLI | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01720 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 125 | 286 | IPR001650 | - | |
| Cca03g01720 | 286 | CDD | SF2_C_DEAD | 126 | 256 | - | - | |
| Cca03g01720 | 286 | Pfam | Helicase conserved C-terminal domain | 139 | 247 | IPR001650 | - | |
| Cca03g01720 | 286 | Gene3D | - | 122 | 286 | IPR027417 | - | |
| Cca03g01720 | 286 | SMART | ultradead3 | 1 | 129 | IPR014001 | - | |
| Cca03g01720 | 286 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-11 | 1 | 286 | - | - | |
| Cca03g01720 | 286 | Gene3D | - | 1 | 121 | IPR027417 | - | |
| Cca03g01720 | 286 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 60 | 68 | IPR000629 | - | |
| Cca03g01720 | 286 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 114 | IPR014001 | - | |
| Cca03g01720 | 286 | SMART | helicmild6 | 166 | 247 | IPR001650 | - | |
| Cca03g01720 | 286 | Pfam | DEAD/DEAH box helicase | 3 | 99 | IPR011545 | GO:0003676|GO:0005524 | |
| Cca03g01720 | 286 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 267 | IPR027417 | - | |
| Cca03g01720 | 286 | PANTHER | RNA HELICASE | 1 | 286 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01720 | Cca-Chr3 | 36330011 | 36333387 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g01720 | 1 | 286 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 92.657 | 0.0 | 555 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01720 | K03257 | - | sly:101266108 | 560.451 |