Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01717 ATGCCTTCCGTTGGGCCGTTAACCACCTCGACAACCCCGTCATCATCGCCGTCCATGTCAAACACAAAAACTTTTCTCATCGTAGATGTCACCAACGTTTTTCCACCCGACGAGGAGGATGTCGCCACTATTTTCAACAACTTACGTGGAATGTGTACTCGCAAAGCTGTCACCATGAAAGAGGCTGTAATCGATGATAATGATGTTGTCAGAGGACTTATGGATTTTGTAAACAGGAATGTCATTCATAGTATCGTCCTCGGTGCATCCATCAAAAGCCCCTTGGCAAGTCTCAAAAAATTTAAAGCCTACCAGTATCAGGATATACCAACAGCCATGATCAAATCAGCCCCAGATTACTGCTCTGTGTACATAATTTCCAAATTGAAGATTGTGTCAGCTCGATCAGCTGTACGACCGATTGCAAAAGGTTTTTTCCCTGCACCGAAACAACTTCCTGCGCAGGCAATTCCATCTAGTGAATCAGAATGTGATGGACCATTAAGGGGACAACCACCTAGAAGTAGGAACACTTACGAGGCACAAGGACCAGTGAGAATGCAGCCACGTGAGAGACCAAGGAGTGCGGGAAGTAGTATGTCAATAGACAACATTGATATAAACACTCGTCCACGACATTGGTCAATGGATGCAAGAGAAATTACAGGGCTTGGGCAATTAGATGTGACTAAACAAGATCCTGATGTATCAGATACCCTTGGGACATCATCAGCTCCCCAATCCTCAAAAGATATTGAAGCCGAGATGAAAAGATTGAAACTAGAACTGAAGCAAACCATGGACATGTACAGCTCAGCATGCAAGCAAGCAATCTCAGCCAAAAACCAGGCAGAACAGATTCGTCAATGGAAAGTGGAAGAGGAACGTAAGGTTGAGGTAGTTAGGTTGTCTCAAGAGGCAGCACTTGCACTGGCAGAAAAGGAGAAGGCTAAAGCCAAAGCTGCAATAGAAGCAGCTGAGGAAGCCAGGAAGTGGGCTGAAAAGGAAGCACAGAGAAGATTGGATGCAGAGATGCAGGCCAGGAGAGAGGCAGAAGAGAAGGATCGAGCATTATGTGCATTGGTTCAAAATGATAAACGCTATAGAAAATACACCATAGAGGAGATTGAAACAGCCACACAAAATTTCTCCTCAGCAAACAAAATAGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCATCTCGATCACACCCCAGTTGCAATCAAAATTTTAAGGCCTGACGCTTCTCAGGGCATGAAGCAGTTCCAGCAAGAGGTTGAGGTACTGAGCTGCATTAGACATCCTAATATGGTCCTCCTCCTTGGTGCATGTCCTGAGCATGGGTGTTtggtgtatgaatacttggacaatggtagcttagaagacagattattccggaaaaacaacagcaaacctatatcatggaagcaacggttccaaatatctgctgagattgcaactgcactcctcttccttcaccaaaacaagccagagcctattgttcaccgagaccttaaaccctccaacatcctcttggacaggaactacgtgagtaaaatcagtgatgttggtctGGCACGGTTAGTCCCTGCTTCTGTGGCAGATACCGTGACACAATACTACATGACTTCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTACCAACAAACGGGGATTCTAACACCAAAATCAGATGTATATTCACTTGGAATAATGTTGCTGCAGATAATCACAGCCAAGCCTCCGATGGGTCTTACTCACCAAGTCAAGAAGGCAATTGAGAAGGGCAAGTTTGAAGAAGTGCTTGACCCTGTGGTCACTGATTGGCCAGTTGAAGATGCTCTATCATTTGCCAAATTAGCATTGCAATGTGCAGAACTCAGCAAGAAGGACAGGCCAAATCTTGCAACAGTTTTGTTGCCAGAGCTTAACAGGCTAAGCGAACTTGGATGCTTTTACAGTAATCAAATTTTGTTTAGAAGTGATGAAATGAGCAATAGCTATGCTTCACGCCCTCCCACACCTCCACGAAGTCAATACTCAGACAAGGAGACATACTATAGGACCTAG 2079 0.4002 MPSVGPLTTSTTPSSSPSMSNTKTFLIVDVTNVFPPDEEDVATIFNNLRGMCTRKAVTMKEAVIDDNDVVRGLMDFVNRNVIHSIVLGASIKSPLASLKKFKAYQYQDIPTAMIKSAPDYCSVYIISKLKIVSARSAVRPIAKGFFPAPKQLPAQAIPSSESECDGPLRGQPPRSRNTYEAQGPVRMQPRERPRSAGSSMSIDNIDINTRPRHWSMDAREITGLGQLDVTKQDPDVSDTLGTSSAPQSSKDIEAEMKRLKLELKQTMDMYSSACKQAISAKNQAEQIRQWKVEEERKVEVVRLSQEAALALAEKEKAKAKAAIEAAEEARKWAEKEAQRRLDAEMQARREAEEKDRALCALVQNDKRYRKYTIEEIETATQNFSSANKIGEGGYGPVYKGHLDHTPVAIKILRPDASQGMKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEYLDNGSLEDRLFRKNNSKPISWKQRFQISAEIATALLFLHQNKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPASVADTVTQYYMTSAAGTFCYIDPEYQQTGILTPKSDVYSLGIMLLQIITAKPPMGLTHQVKKAIEKGKFEEVLDPVVTDWPVEDALSFAKLALQCAELSKKDRPNLATVLLPELNRLSELGCFYSNQILFRSDEMSNSYASRPPTPPRSQYSDKETYYRT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01717 692 ProSiteProfiles Protein kinase domain profile. 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01717 692 Coils Coil 249 269 - -
Cca03g01717 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Cca03g01717 692 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 36 674 - -
Cca03g01717 692 SMART serkin_6 383 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01717 692 MobiDBLite consensus disorder prediction 225 249 - -
Cca03g01717 692 Pfam Protein kinase domain 385 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01717 692 Gene3D Transferase(Phosphotransferase) domain 1 456 653 - -
Cca03g01717 692 MobiDBLite consensus disorder prediction 668 692 - -
Cca03g01717 692 MobiDBLite consensus disorder prediction 232 249 - -
Cca03g01717 692 MobiDBLite consensus disorder prediction 154 204 - -
Cca03g01717 692 PANTHER OS02G0152300 PROTEIN 36 674 - -
Cca03g01717 692 Coils Coil 300 354 - -
Cca03g01717 692 MobiDBLite consensus disorder prediction 668 685 - -
Cca03g01717 692 SUPERFAMILY Protein kinase-like (PK-like) 367 642 IPR011009 -
Cca03g01717 692 Gene3D Phosphorylase Kinase; domain 1 354 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01717 Cca-Chr3 36283781 36287703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01717 59 653 Receptor kinase-like Gene Family AT5G12000 59.330 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca03g01717 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01717 - - gmx:100798861 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01717 03 36283781 36287703 Cca03g01717 03 36283781 36287703 ECH