Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01713 ATGGAGGAGATGTCAACCACGATTGCAGTGCCATTAAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTAGCCATATGGATGTATCCAGAATTAAGCTGATGGCAGATGCAGGATTGTTATCCAATTCTATAACTAAGGTTTCCACTGAGACTTTAATAGGTTCGGATGAGAATCGTGATGGTGCACTTCGGGAGGATGAAGTTGGTGTTACAGCTGTCACGTCTCCAGAGCAGGGAACAGAAAGACAAATTCCATCATTGGACATGATGTCCCATAATATAAACTCTTTGGTTGTTGGTGATGAAGTTTTGACTCCAGAAATCGAGGAGGATGATTTGATATCACTGGAAGGTGATCCCATTATTGATAGCTCTTCTCTTTCAGTAGCCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCTGATTTAGGGACTGCAAGTTCCGTAGACATAGTGAAGAACTTATCCGCTGTCAAAATTGCTGCCAGGGCTGCTGATTTGGGTGAGTCAAATGTAGAGGGAAATGTTATGAGTGATCCCCTTGCTGTAGCAGTGAGCCTTGAAGAAGAGGCAGGAGTTAGATCTAGCCCAACACCTACTACCGGTGTTCTTCATCAACTACCTCTGGAAAGATCTGTGAGTGGAACAGTGGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCAGTTGCAGCTGTACCTAGGTTTTCGAAAATCCCTATTCAAATGCTAATTGGTGACAGGGTACCTGATGGAATAAACAAATGTTTCAATCAGCAGACAGTACATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGCCGTGAGCGCATGCATTGGGCCTTGGCCGAGGAAATAGAACTTGTCAAGGAAGGTCTATCAGTTGAAAGTACCAAGGATGATTGTCGAGAAATATGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATTCTGAGGTTGGGGGGGAAGTTAATGGTGAGGCTATTGCCCCAGAAACTGTTGGATCCACTGCCGTTGTTGCTGTTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGCAAAGAACCAATGGCGCTATCTGTTGATCACAAACCTAATCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAGTGGAATGGTCACCGAGTGTTTGGTGTTCTTGCAATGTCAAGGTCTCTTGGTGATAGGTATCTGAAGCCATGGATTATTCCAGACCCTGAGGTGACGTTTCTTCCACGGGCAAAAGACGATGAATGCCTCATTCTGGCCAGTGATGGCCTATGGGATGTAATGACAAATGAAGAGGTGTGTGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTGTCGAATCGCGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAAAGAAAATTCAAGAGCAAGACATGA 1659 0.4436 MEEMSTTIAVPLRVGNSVCDKPTIASHMDVSRIKLMADAGLLSNSITKVSTETLIGSDENRDGALREDEVGVTAVTSPEQGTERQIPSLDMMSHNINSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASENSSVCGDEFISSEVSSDLGTASSVDIVKNLSAVKIAARAADLGESNVEGNVMSDPLAVAVSLEEEAGVRSSPTPTTGVLHQLPLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDAVAAVPRFSKIPIQMLIGDRVPDGINKCFNQQTVHFFGVYDGHGGSQVANYCRERMHWALAEEIELVKEGLSVESTKDDCREIWKKAFTNCFLKVDSEVGGEVNGEAIAPETVGSTAVVAVICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSLGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLALPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01713 552 Pfam Protein phosphatase 2C 259 535 IPR001932 -
Cca03g01713 552 ProSiteProfiles PPM-type phosphatase domain profile. 238 542 IPR001932 -
Cca03g01713 552 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 111 552 - -
Cca03g01713 552 SMART PP2C_4 228 540 IPR001932 -
Cca03g01713 552 PANTHER ALPHABET, ISOFORM E-RELATED 111 552 - -
Cca03g01713 552 CDD PP2Cc 240 542 IPR001932 -
Cca03g01713 552 ProSitePatterns PPM-type phosphatase domain signature. 289 297 IPR000222 GO:0043169
Cca03g01713 552 Gene3D - 225 552 IPR036457 -
Cca03g01713 552 SUPERFAMILY PP2C-like 234 543 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01713 Cca-Chr3 36242582 36248065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01713 1 552 PP2C-type Phosphatase Gene Family AT1G17550 48.319 2.97e-165 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01713 K14497 - gmx:102662702 946.421