Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01712 ATGGAGGATCTCGAGGAGGAAGAGAACGGAACGGAGGAGGTCTTGGGTTCGAGCTTGACCATGGAGAAGGTGGCGGCGGCCAAGAAGTTCATTGAGAATCATTACAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTTTTGGAAAGAAAATTAGCTTCTTCAGATGTGCCAAATGAGGAGCGGATCAACCTCATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGGCACAAGATCTGTGTTGATGATTTTGAACTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGTCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAGTCTGAAATGCTTAGGAGAGGACAGGTTGAACATGTTAGAGCTGAGAGGAACTTGCTGGCCGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGACTACTTGTATTTAATTATGGAGTATCTACCTGGGGGTGACGTTATGACTCTGCTAATGAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTACATTGCACAAAGTATTCTGGCCATAGAATCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTACTTCTGGATAAAAATGGTCATATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGATTGTATTGCCTTGTCTACACTGCATGAAAATCAGGCCATGGATGATGAAACTTTGGCAGAACCAATGGATGTTGATGATGCAGACAATCGGAGTAGCTGGAGAAGTCCACGTGAACAGCTTCAACATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCTGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTAGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCTCCATTTTACTCCGATGACCCAATAACTACATGCAGAAAGATCGTTCATTGGAGAAATCATTTAAGGTTTCCGGAAGATTCCCAGTTGACACATGAGGCTAAGGATTTAATCTATAGGTTGCTGTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCCAATGAAATAAAGGCTCATCCTTGGTTCAAGGGTGTGGAGTGGGATAAACTATATGAAATGGAGGCAGCATTTACTCCTCAGGTCAATGGAGAGCTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCAACAGCAGCAAGAACTGGATCTGGATCCTCACGAAAGATGCTTCTAACTCCCAAAGATCTAAACTTTGTTGGTTACACTTACAAGAACTTTGATGCTGTAAAGGAAGGGCTTCGTCAATCTTTTGGTGATTCCATGCAAGAATATGCTTCTAAACGGGCAGCTGAAGAAACAAGTTTGCAAATGCTTGCGTCATCTGGCGATCCCATGTTACCATAA 1515 0.4257 MEDLEEEENGTEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLMREDTLSENVARFYIAQSILAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQAMDDETLAEPMDVDDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDSQLTHEAKDLIYRLLCDVDHRLGTRGANEIKAHPWFKGVEWDKLYEMEAAFTPQVNGELDTQNFMKFDEVDPPTAARTGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSFGDSMQEYASKRAAEETSLQMLASSGDPMLP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01712 504 Pfam Protein kinase C terminal domain 415 460 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cca03g01712 504 SMART pkinase_C_6 397 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca03g01712 504 ProSiteProfiles Protein kinase domain profile. 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01712 504 Gene3D Phosphorylase Kinase; domain 1 415 425 - -
Cca03g01712 504 ProSiteProfiles AGC-kinase C-terminal domain profile. 397 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca03g01712 504 SMART serkin_6 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01712 504 Pfam Protein kinase domain 94 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01712 504 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01712 504 Gene3D Phosphorylase Kinase; domain 1 91 176 - -
Cca03g01712 504 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 485 - -
Cca03g01712 504 SUPERFAMILY Protein kinase-like (PK-like) 90 439 IPR011009 -
Cca03g01712 504 Gene3D Transferase(Phosphotransferase) domain 1 295 414 - -
Cca03g01712 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 485 - -
Cca03g01712 504 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Cca03g01712 504 CDD STKc_NDR_like 91 461 - -
Cca03g01712 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cca03g01712 504 Gene3D Transferase(Phosphotransferase) domain 1 177 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01712 Cca-Chr3 36226060 36236003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01712 1 503 AGC Kinase Gene Family AT4G33080 80.588 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Cca03g01712 Pkinase 7.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01712 K08790 - gmx:100815717 983.015