Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01708 ATGATAATCCTTTGTTTTTGTACGAATGATGCCAAAATGACAGATAAAAATCTAAGGCCACCAGATTCATCTGACAGTGGTTTCACCAACCAATGGCCTTTGGAAGTCTCTGAGTACTTCTATTTTGATGATGATGATGATCCAACAGATTCATTTGTTTTCGGGCATGTCCTCAGCCAGGATAATCAAGCCAATGAAGTTGGTGACTTTAAAGGAACTAGGGCCAGCCACTTCGAGGGGTTTTCTAGCAGAGAGGTTGGTAATGAACATGAGAAAAAGGAAGTCAATGATAGAGTTGCATTCAAAACAAAGTCAGAGGTAGAAATACTGGACGACGGGTTCAAGTGGAGGAAGTACGGAAAGAAGATGGTGAAAAACAGCCCCAATCCGAGGAACTATTATAAGTGTTCAGTGGACGGATGCCCAGTAAAAAAAAGAGTTGAAAGAGATAAGGATGATCCAAGTTATGTATTAACAACCTACGAAGGCATTCACACTCACCTGAGTTATTGCTGA 516 0.4089 MIILCFCTNDAKMTDKNLRPPDSSDSGFTNQWPLEVSEYFYFDDDDDPTDSFVFGHVLSQDNQANEVGDFKGTRASHFEGFSSREVGNEHEKKEVNDRVAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVDGCPVKKRVERDKDDPSYVLTTYEGIHTHLSYC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01708 171 SUPERFAMILY WRKY DNA-binding domain 103 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01708 171 ProSiteProfiles WRKY domain profile. 105 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01708 171 Pfam WRKY DNA -binding domain 111 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01708 171 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01708 171 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 23 168 - -
Cca03g01708 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 168 IPR044810 GO:0003700
Cca03g01708 171 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01708 Cca-Chr3 36154447 36155999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01708 98 169 WRKY Transcription Factor Family AT5G26170 87.500 6.14e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g01708 WRKY 7.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01708 - - gmx:100819462 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01708 03 36154447 36155999 Cca03g01708 03 36154447 36155999 ECH