Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01705 ATGATTGTGGCGATGGGCATGACGCTGTTGCCGCCATTAGGTTTTCTCCACCACCATGACACTTTCGTGGCCAAGATGAGTTTGGGCGCGGCGGCCGAGGAGGACTCCGCCTCCGAAATCCAGCTGCCGGCGGAGATCGACTGGCACATGTTAGATAAGTCCAAGTTCTTCTTCCTGGGCGCCGCCTTATTCTCCGGCGTCTCATTCGCACTCTACCCCATGGTGGTGCTGAAGACGCGCCAGCAAGTTTCCTCGGCACGCTACACGTGCCTGCACATGGCCTCCGCCATTCTCCGCCACGAGGGCCTCCGAGGCTTCTACAAAGGCTTCGGCACCTCCCTCATGGGAACCATCCCCGCACGTGCGCTCTACATGGCTTCCCTCGAAGTCACCAAGAGCAACGTCGCCACCGCCTTCGTCCAATTAGGCTTCTCCCACAccaccgccctcgctgccgccagtgccgccgccggcgtcacctccgccATGGCGGCGCAGCTCGTCTGGACCCCGATTGATGTCGTGAGTCAGAGACTCATGGTTCAGGGGAGCGGTGGGAGCCAAACCGTGCTTGCCAATCTCAATTCTGAGAGTTACAGGAACGGTTTTGATGCGTTTCGGAAGATCATGTATGCGGATGGGGCAAGAGGGTTCTATAGAGGCTTTGGGATTTCTATATTGACTTATGCCCCTTCTAATGCGGTTTGGTGGACTTCTTATTCCATGGTGCATAGACTCATTTGGGGTGCTTTTGGTTCTTATATGGGTAAGACTGGTCATGATGCTTTAGGGAGTGGTTTTAGGCCTGATTCTAGGGCAATGGTGGCGGTTCAAGGGTTCAGTGCAGTTTTGGCTAGTGGGGTGTCTGCGATTGTCACAATGCCCCTTGATACCATTAAGACGAGGTTGCAGGTGTTGGATACCGAAGAGAATGGGAGAAAGAGGCCTTTAACTTTTGTGCAAACGGTTAGGAGTTTGGTAAAGGAAGGTGTATTGGATAATTCATGCAAAGGAGATATGTTTATACGAATCGAAAGGAACAAAAATTGTTCGTGCATATTTGTTCCTCCATTCTTTTCTATTAGATATGTTTTCTTGTaa 1101 0.4905 MIVAMGMTLLPPLGFLHHHDTFVAKMSLGAAAEEDSASEIQLPAEIDWHMLDKSKFFFLGAALFSGVSFALYPMVVLKTRQQVSSARYTCLHMASAILRHEGLRGFYKGFGTSLMGTIPARALYMASLEVTKSNVATAFVQLGFSHTTALAAASAAAGVTSAMAAQLVWTPIDVVSQRLMVQGSGGSQTVLANLNSESYRNGFDAFRKIMYADGARGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWGAFGSYMGKTGHDALGSGFRPDSRAMVAVQGFSAVLASGVSAIVTMPLDTIKTRLQVLDTEENGRKRPLTFVQTVRSLVKEGVLDNSCKGDMFIRIERNKNCSCIFVPPFFSIRYVFL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01705 366 Pfam Mitochondrial carrier protein 61 135 IPR018108 -
Cca03g01705 366 Pfam Mitochondrial carrier protein 278 329 IPR018108 -
Cca03g01705 366 Pfam Mitochondrial carrier protein 152 248 IPR018108 -
Cca03g01705 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 134 IPR018108 -
Cca03g01705 366 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 26 338 - -
Cca03g01705 366 SUPERFAMILY Mitochondrial carrier 49 329 IPR023395 -
Cca03g01705 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 246 IPR018108 -
Cca03g01705 366 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 26 338 - -
Cca03g01705 366 Gene3D Mitochondrial carrier domain 46 190 IPR023395 -
Cca03g01705 366 Gene3D Mitochondrial carrier domain 191 338 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01705 Cca-Chr3 36140591 36142107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01705 26 330 Chloroplast and Mitochondria Gene Families AT1G72820 63.430 6.35e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01705 K15121 - gmx:100784202 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01705 03 36140591 36142107 Cca03g01705 03 36140591 36142107 ECH
Cca03g01705 03 36140591 36142107 Cca05g00789 05 21820266 21821134 ECH