Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01704 ATGGCGAACAAGACGAAGAAAGCAATGAGCCTCAACGATAGTCACTATCGCTTCCTCCAAGATCACTCTGCTCCTCCCAAGCCCTCTTTCGATGAATCCTCCACCACAAACCAACAACACCAAAACATCCCTCACTTTTCCATAATCACCGATTTTGATTCTCCAATCGGGTTCAACACGGACGAACCAAACAAGGAACAACAACAAGCTTCATCCAACGATGTTCCCCATCTTTATGTTCAATCTTCCGCTACTCCTAGGCAAAATTCGGATGAGAAACACGAACCGATCAAGCTTCAAGAACAACAAGAAGCTCCACCTCACGTGGCTATTTCTTACCCTAAGGAAAAAAAGAAGACGAAGGTGAAAGGGCAGGGGCGACGCCGCCTCTGCAAGGTTGTGCATGAAGATGCCAGCAAAAGTGTGGCAGTTGATGAGTCCAAGTTTGATGAACTCATCGACCTTGATTCGCCGGTTCCGGGCCCGAGGAACACAATCCAGATTGAGGAGAGTGGGGGCAAGAACGAAATTAGGGATATTTTGAATGAATTGAACTCCAAGTTTGAGTTGTTATCGGTTGAGAGGAAGCCGGCTCCGAAGCGTGTTGAGGGTTTGGTTGGAGGGAAAGAAAGTTGTGATGACGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTCTCTCAACCACAGGAGAGCTTGTCAGAGGGTGCTAAGAATGATGGGAGTGGCGGTATTGAGTATGATTCAGATGACTCTGTTCAAGAGGTGGATCATTTTGAGCCTGAGAATGATGGGTCTATAACTTTGACTGGCCCCAGATCGACTTACAAGTTGCAGGCTAAAATTGCAAAAATGTTGTATCCGCATCAGCGGGAGGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTTTCTAGCTGGACTCTTTCATTCTCGTTTAATTAGAAGGGTATTGGTTGTAGCACCGAAAACCTTATTGCCACATTGGATTAAAGAATTGGCAGCTGTTGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCTACGAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGGATAATTATTTTGATGACGATGAAAGTGAAGATGGCACTACATGGGACTACATGATACTTGATGAAACAAAATTACACGAAAAGGTTGGGCCTAAAAATGTTGATTTAGTTGTGTTCTTCCAAAAGAAGGAAAATGGATTCAATGAGGAAGATTTAACTGTATAG 1374 0.4432 MANKTKKAMSLNDSHYRFLQDHSAPPKPSFDESSTTNQQHQNIPHFSIITDFDSPIGFNTDEPNKEQQQASSNDVPHLYVQSSATPRQNSDEKHEPIKLQEQQEAPPHVAISYPKEKKKTKVKGQGRRRLCKVVHEDASKSVAVDESKFDELIDLDSPVPGPRNTIQIEESGGKNEIRDILNELNSKFELLSVERKPAPKRVEGLVGGKESCDDEGLEYGSAGSSFSQPQESLSEGAKNDGSGGIEYDSDDSVQEVDHFEPENDGSITLTGPRSTYKLQAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRVLVVAPKTLLPHWIKELAAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGDNYFDDDESEDGTTWDYMILDETKLHEKVGPKNVDLVVFFQKKENGFNEEDLTV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01704 457 PANTHER SNF2/RAD54 FAMILY MEMBER 255 428 - -
Cca03g01704 457 MobiDBLite consensus disorder prediction 221 237 - -
Cca03g01704 457 PANTHER OS04G0692700 PROTEIN 255 428 - -
Cca03g01704 457 MobiDBLite consensus disorder prediction 202 216 - -
Cca03g01704 457 Pfam SNF2-related domain 289 427 IPR000330 GO:0005524|GO:0140658
Cca03g01704 457 MobiDBLite consensus disorder prediction 27 48 - -
Cca03g01704 457 Gene3D - 268 429 IPR038718 -
Cca03g01704 457 SMART ultradead3 281 453 IPR014001 -
Cca03g01704 457 MobiDBLite consensus disorder prediction 60 87 - -
Cca03g01704 457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 425 IPR014001 -
Cca03g01704 457 MobiDBLite consensus disorder prediction 1 128 - -
Cca03g01704 457 MobiDBLite consensus disorder prediction 202 249 - -
Cca03g01704 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 425 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01704 Cca-Chr3 36137619 36140138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01704 286 426 RAD5 or RAD16-like Gene Family AT1G02670 30.263 9.10e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca03g01704 SNF2_N 4.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01704 K20093 - gmx:100779283 660.988