Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01703 ATGGACGCAGCAGCTCCTTACAATCCCCGCACCGTCGAAGAGGTTTTCAGAGATTTCAAGGGCCGCAGAGCTGGCATGATTAAAGCCCTCACAACCGATGTCCAACACTTCTATCACCAGTGTGATCCAGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTACCGAGCACTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCGGCATTGGGTATTAACTTTGCGAGAGATGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATGCATGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGACTGTTTAACATGATAAATGATCTTCCAACGATATTTGAGATTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATAGCAGTAACAAGTCTAAATCAAACTCAAAGAAAGGTTCTGAATCTCAAGGACAGAAAGGTTCTGAATCTCAAGGGAAGTATTCAAAAGCAATGCAATTAAaggacgaggatgagaatggtctggaagaggacgatgaagaggagcatgGAGAGACACTTTGTGGGGCATGTGGAGAGAACTATGCGGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGAAAATGTGTGAAGATTACCCCTGCTAGGGCTGAGCATATCAAGCACTACAAGTGTCCATCTTGCAGCAACAAGAGAGCTCGACCTTAA 786 0.4198 MDAAAPYNPRTVEEVFRDFKGRRAGMIKALTTDVQHFYHQCDPEKENLCLYGFPTEHWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEIVTGMAKKQGKEKSSVSNHSSNKSKSNSKKGSESQGQKGSESQGKYSKAMQLKDEDENGLEEDDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRARP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01703 261 SUPERFAMILY FYVE/PHD zinc finger 197 258 IPR011011 -
Cca03g01703 261 SMART PHD_3 207 255 IPR001965 -
Cca03g01703 261 MobiDBLite consensus disorder prediction 145 201 - -
Cca03g01703 261 MobiDBLite consensus disorder prediction 150 182 - -
Cca03g01703 261 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Cca03g01703 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Cca03g01703 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 256 IPR013083 -
Cca03g01703 261 Pfam PHD-finger 208 257 IPR019787 -
Cca03g01703 261 PANTHER CPG BINDING PROTEIN 4 261 IPR045104 GO:0006355|GO:0042393
Cca03g01703 261 CDD PHD_AL_plant 207 257 IPR044104 -
Cca03g01703 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Cca03g01703 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01703 Cca-Chr3 36130250 36134548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01703 3 260 Alfin-like Transcription Factor Family AT3G42790 75.194 1.75e-125 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca03g01703 Alfin 4.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01703 - - pop:7476667 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01703 03 36130250 36134548 Cca03g01703 03 36130250 36134548 ECH
Cca03g01703 03 36130250 36134548 Cca05g00790 05 21827828 21835363 ECH