Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01701 ATGGATAATAATAACTTTGGCTTTGTTTCCTACGATGATGAAGATCCATTCCTTTGTCCACTTATTCCAAACTTACTTGTCGAGGTGGACCCCTCACTAGTCTTACCCAAGGCACAGCCCCACCAACAAAATGATCATCCTTTTGGCCTTCAACACGGTAATAATGTTCCCTTCACCATCCAAGATCAATTCATGCAGGACAACAATAATAATGGAGAAGTTGCAAACTTTGACGTTGAGAGTAGGGGCCAACAAACCATGCATGTTGATGGCAGTAATAATATTTCCAATGAAGGAGGAGTTGGTAATTTTGAAATTGAGGGTAGGGGCCAAACCATGCATGGTGATGGCAGTAATAATATTTTCAATGAAGGAAGAGTTGGTAACTTTGAAGTTGAGGGTTATAATAATATCTTCAATGAAGGAGGAGTTGGTAACATTGAAGTGAGGGATACATCAACGATGAGGCACCAACCCATGCACCATCATTTTTCCAATGGAGGTGTTGGTAACTTAGAAATGAGGGGTGGGTTTCCATCGAGGCAACGGAATCAAACTCAGCCACCAAATGAGAATATGGCTCCACCGTTCCACCAAGGAGTGACCTCAGTTTCGTATTGGCCCCTAATACCAAGGCCATTCTTTTGCACTTGCTGTCAAGTTCTTAGACAAATAATTCACACAAATGGCGTTCAGTTTGAGAAGCTTGAGATTCATGGAACGATTGGGGTGATGGGGCATGCTATAATCCAGAACCGGAACATAACACAGGGTGATCATCCTTCAAGTGACCCTCATCAAATTATTGATTTCCACTACAGAAGCACAGAACAAATAAAGAGTTTCATGGTAGAGTACTGTACACAGATGAGTAAATTAGGGTATATTATTGTGGAAGATGTGTTGTCTACTTATTATGAGATCCTCTGCACTGGAGTGGATTGGGCTAAAGATACTAGTGACGAAGACATTGATTTGATTCCATCAAATGACATGGGGCAAGATTTtgagcccgagcctcaacctcagcacgagcccgagcctgaggccgtgaacttgaAAAGGAAAAGGAGACGACCTGATGCAGAGCAGAGGAAAAGAATAAAAGCTATGAAATTGGAAGATTGCAGCGATTATTTCCATTTAACCATTGGAGCCGCAGCGCAAAAACTGGACGTATGCATCTCTGCCTTAAAGAGTCTATGCCGCAGGAATAATTTAGAAAATTGGCCCCATAGAAAGTTGACAAGCAATATGAAGAAGGTGGCAGTATTAAGAAGAGCATTGGATTCACCGGATTCAAGGACAAGGACAATAGCTAGAGAGCAAATTAAAATACTTCAAGACGAAGTACTTGAGTTGTGTGTTGGAATTACACCAACTGGAATAGAAATGGTACAACTCTGA 1407 0.3945 MDNNNFGFVSYDDEDPFLCPLIPNLLVEVDPSLVLPKAQPHQQNDHPFGLQHGNNVPFTIQDQFMQDNNNNGEVANFDVESRGQQTMHVDGSNNISNEGGVGNFEIEGRGQTMHGDGSNNIFNEGRVGNFEVEGYNNIFNEGGVGNIEVRDTSTMRHQPMHHHFSNGGVGNLEMRGGFPSRQRNQTQPPNENMAPPFHQGVTSVSYWPLIPRPFFCTCCQVLRQIIHTNGVQFEKLEIHGTIGVMGHAIIQNRNITQGDHPSSDPHQIIDFHYRSTEQIKSFMVEYCTQMSKLGYIIVEDVLSTYYEILCTGVDWAKDTSDEDIDLIPSNDMGQDFEPEPQPQHEPEPEAVNLKRKRRRPDAEQRKRIKAMKLEDCSDYFHLTIGAAAQKLDVCISALKSLCRRNNLENWPHRKLTSNMKKVAVLRRALDSPDSRTRTIAREQIKILQDEVLELCVGITPTGIEMVQL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01701 468 MobiDBLite consensus disorder prediction 338 366 - -
Cca03g01701 468 MobiDBLite consensus disorder prediction 329 366 - -
Cca03g01701 468 ProSiteProfiles RWP-RK domain profile. 358 438 IPR003035 -
Cca03g01701 468 PANTHER RWP-RK DOMAIN PROTEIN 43 455 - -
Cca03g01701 468 Pfam RWP-RK domain 371 417 IPR003035 -
Cca03g01701 468 PANTHER PROTEIN RKD4 43 455 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01701 Cca-Chr3 36120566 36122743 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01701 318 417 AtRKD Transcription Factor Family AT4G35590 32.000 2.21e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca03g01701 RWP-RK 3.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01701 - - ccaj:114915208 966.066