Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01699 ATGGATAGTGTCTCGGAGTTTCCTTTGTTTGGTTCTGACCCATTTGACATTACACTTCTCCAAAACTTCCTCGAGGAGGAGGACCCACTTGTCTATTTATCCAATGATGAGGTACCCAATGAGCAGCCCCTGCAGCAACAACATGTTTCTTTTGGTGGTAGGTGTGTTTTCTTGCCGGATCCAGTGATTCAAAATCAACCAAATGGAAAAGGAGTTGCTAACTGTGTAGCGGGTTCATCATCCACCATGAGGGGTAAGGAACACATGATGCAAGATCAATTCTTGCATGATGGAAATGATAATTTTATCAATGGAGAAACATTCGGTAACTTCAGTCAACCGGAATTTGAGAATATTGGTCCACTCATTTACCAACATGAACATATGATGTCACTTCCGCATTGGCCACCGTCACCAAAGCCATTCTTTTGCAGTTGCTGTCAAGTTCTTAGACAAATAATTCACACCAATGGTTCTAGGTTTGACAAGCTTGAGATACATGGAACGATAGGGATGATTAGCCATGCAATAATCCGGAATACCACTCCGGGTGATCCTTCAAGCAATTATCAAATGGTTGATTTCTGCAACAGAAACAAAGAAGAAATTAAGAGTTTCCTAAAACAGTACTGTGAGCAGCAAAATATATTCGGGTACATTATTATGGATGATCCGTTGTCTGCGTATTATGATGCCCTCAGCACTGGAATGGATTGGGCTCAAGATATCAGTGACGAAGACGATGATTTGATATCAGAAAATGACATGAAGCAAGATCAAGAGCCGGAGCATGAACCTGAGAATGAAATGGCTTCAAATGCTAGACGACTTCAGAGGGAGAGAGTAGCGAAGATGACATTGGGTGATTTGAGCGATTACTTCCATATACCGATTAAGGAGACAGCGAAACTACTGGAAGTAAGCACTTCTGTGGTGAAGAAAGTATGTCGCAAGGCAGAGTTATATAGATGGCCCCAAAGAAAGGTGAAAAGTAATATGAGGAAGATCACAGTGCTCAGAAGAGGATTGGCTAATCCAGGAACAAGGGAAAAAACTCGAGTGGAAATTCAAAGACTCCAACAAGAAATGGTTGAGTATTGTGGTGGACTTGCCCCAACTGGAATAGAAATGCTCCAAGTATAG 1143 0.4182 MDSVSEFPLFGSDPFDITLLQNFLEEEDPLVYLSNDEVPNEQPLQQQHVSFGGRCVFLPDPVIQNQPNGKGVANCVAGSSSTMRGKEHMMQDQFLHDGNDNFINGETFGNFSQPEFENIGPLIYQHEHMMSLPHWPPSPKPFFCSCCQVLRQIIHTNGSRFDKLEIHGTIGMISHAIIRNTTPGDPSSNYQMVDFCNRNKEEIKSFLKQYCEQQNIFGYIIMDDPLSAYYDALSTGMDWAQDISDEDDDLISENDMKQDQEPEHEPENEMASNARRLQRERVAKMTLGDLSDYFHIPIKETAKLLEVSTSVVKKVCRKAELYRWPQRKVKSNMRKITVLRRGLANPGTREKTRVEIQRLQQEMVEYCGGLAPTGIEMLQV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01699 380 PANTHER PROTEIN RKD4 43 368 IPR044607 GO:0003700
Cca03g01699 380 PANTHER RWP-RK DOMAIN PROTEIN 43 368 - -
Cca03g01699 380 Pfam RWP-RK domain 284 331 IPR003035 -
Cca03g01699 380 ProSiteProfiles RWP-RK domain profile. 269 352 IPR003035 -
Cca03g01699 380 MobiDBLite consensus disorder prediction 256 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01699 Cca-Chr3 36111224 36112946 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01699 284 353 AtRKD Transcription Factor Family AT5G53040 37.143 4.33e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca03g01699 RWP-RK 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01699 - - ccaj:109790026 771.926