Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01693 ATGAAACAAGAAAAAGTTTCTTCGTGGACTATGAAGGTTTTGGTAGACGCAATGACAAATTCAGGGTTGTCCACAATCTCTACTGCACTGAATGAAAGTTTCCATGACGCAGAAAATGAACAAACTGATAAACAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCCATTACATTTTCAGGAATATCGTTGCCCCAGGTTGCACGTACATTGATGAAGATGAACTTGGGAGGTTCATGATTAAGGAAGACGTGCGAATGTTGAAGATATTCCAAGAACGCAAAGCATTGGCACACGCCTTAAGTGACCCCAAAACAGCTGTAAAACAACTAAACAAGCTCGTGACTGGAATCCTACTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCAATCGTTCGTGTTTGTAATGCATCCATTTGCTGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAGGAAATGAATATATTAACAACAGTCTTGTTGAAGCTTAATAATGAAAAGGTTTACTATCCAAACTCTGTTCTGGCCACTAAACCAATTAGCAATTATTACAGAAGCTCAGATATGGGTGACGGGGTAGAGTTCTCCATTGATTTTATGACACCAGCTGAGAATATTGGGGCACTGAAAGTAAAATTAAAGAGGTACCCGGAGAAAAATCCACAATACTGGCATCCTAATCGCGACTTATTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGGCGTCTATGTTACTCACACAATGAACTTTCAAGAGTTTGGGGAAAAAGGCAAGCGAAGAACTGAATTGATGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCGTTCATCTCGGACATATGGAACCAGACAAGAGTGTACTCCATATATGA 930 0.3903 MKQEKVSSWTMKVLVDAMTNSGLSTISTALNESFHDAENEQTDKQITNEMEATAAAHYIFRNIVAPGCTYIDEDELGRFMIKEDVRMLKIFQERKALAHALSDPKTAVKQLNKLVTGILLSCLETHARTYLKQSFVFVMHPFAVGDRCVIDGVELLVEEMNILTTVLLKLNNEKVYYPNSVLATKPISNYYRSSDMGDGVEFSIDFMTPAENIGALKVKLKRYPEKNPQYWHPNRDLLVKEIEDVNKIKMGVYVTHTMNFQEFGEKGKRRTELMMEIKKIFEELNIRYNLLPQGVHLGHMEPDKSVLHI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01693 309 Pfam Mechanosensitive ion channel 136 287 IPR006685 GO:0016020|GO:0055085
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1 88 - -
Cca03g01693 309 Gene3D - 141 190 IPR023408 -
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 88 IPR016688 -
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 134 299 - -
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 87 120 - -
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 134 299 IPR016688 -
Cca03g01693 309 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 87 120 IPR016688 -
Cca03g01693 309 SUPERFAMILY Sm-like ribonucleoproteins 135 190 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01693 Cca-Chr3 36057451 36059362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01693 1 297 Mechanosensitive Ion Channel Family AT5G12080 50.427 1.09e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01693 K22048 - gmx:100777617 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01693 03 36057451 36059362 Cca03g01693 03 36057451 36059362 ECH