Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01692 ATGGGGGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCAAATGAGGGTGGTGGTGAATCTCTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCACATAGAATATGCAACGACAACGAGGTTGCAGCAAAGTCCCCACCTTTGAACTGTGCTTCCCCTGAGATAAAGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCCAACCTTACCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCTGTGGATGGTACCCTTTTGGAAGAGAATGGCAGCTCAGGTTTGCAAGAACAATTGACTGTTAGTTCGCCATATAAAGCATCACCTAATAACAAAACTGGGTCTGGAACTGTTAATAGAACAGTCTCCATCCTTTCTGTTATCACACCGAAGACACCGTTGATGGCGTCTCCTGGGCCGGCCGGGGAGGATTTTGATGAACTCGTTTACAAGAAAGTTGAATTGAGTAAAAGCAAGCGTAGTAGGAGAGTGACAACTAAGGTTTTGATTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGCAAACTGGAAAGGATGGAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTCTGTGGCATGTTGGTTACCAGATGGTTCATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTTCAGGTCTTCATTTGGATTGGTTTGGTTCTTCTCGCATGGGTGCTGTTGATTAATCGCGGGGTCAACCGGTCTGAATTGGCCACAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCATGAAGACATTGTTACTGAAGATTTTGGCGTCGAATTTCCATGTTAAATCTTTCTTTGATCGAATTCAAGAATCACTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGATCGGAACAGCACGAAGTCTTAGTCATTTTAGTTTCAGGAGTACAGATGGTAAAGGCGGCACAAAGAAACAGACTATTGATATTGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCATGGACTATGAAGGTTTTGGTAGATGCAATGACAAATTCAGGGCTGTCCACAATCTCTAGTGCGCTGGATGAAAGTTTCGATGATGGGGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGAAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAAGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAGATTACCAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAAAGCATTGGCACATGCCTTAAGTGACACCAAAACAGCTGTAAAACAACTAAATAAGCTCGTAACTGGAATCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTGATGGAGATTGCAACAACTAAAGTACTTGTTTTCCTCTCTTCTCAACTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTTTTCTATCCAAACTCTGTTCTGGCCATAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACGGTGTAGAGTTCTCCATTGATTTTACGACACCTGCTGAGAAGATTGGGGCACTGAAAGAAAAAGTAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCTAATTTCGGCTTATTAGTGAAGGAGATTGTAGATGTAAACAAGATAAAGATGGGTGTCTATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAGGCGAAGAACTGAACTGGTGATGGAAATAAAGAAAATATTTGAAGAACTGAATATCAGATACAACCTTCTTCCTCAAGGCGTTCATCTCAGACATATTGAACCAGTCACAAATGTGCAAAATATATGA 2274 0.4208 MGEKKREVMVAIPNEGGGESLMPKQQSRVNSPHRICNDNEVAAKSPPLNCASPEIKFMPSPNKPPKVPTSNANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGSSGLQEQLTVSSPYKASPNNKTGSGTVNRTVSILSVITPKTPLMASPGPAGEDFDELVYKKVELSKSKRSRRVTTKVLIEWFVFVCIASSLVASLTVGKLERMEIWGLGFWRWCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVHGLKKCVQVFIWIGLVLLAWVLLINRGVNRSELATKILNGVTWTLVSLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKIGTARSLSHFSFRSTDGKGGTKKQTIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALDESFDDGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTGILVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVFYPNSVLAIKPISNYYRSPDMGDGVEFSIDFTTPAEKIGALKEKVKRYLERNPQYWHPNFGLLVKEIVDVNKIKMGVYVTHTMNFQEFGEKNRRRTELVMEIKKIFEELNIRYNLLPQGVHLRHIEPVTNVQNI 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01692 757 Gene3D - 589 638 IPR023408 -
Cca03g01692 757 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 5 745 - -
Cca03g01692 757 SUPERFAMILY Sm-like ribonucleoproteins 579 638 IPR010920 -
Cca03g01692 757 MobiDBLite consensus disorder prediction 12 73 - -
Cca03g01692 757 PIRSF Memb_At2g17000 11 756 IPR016688 -
Cca03g01692 757 MobiDBLite consensus disorder prediction 20 34 - -
Cca03g01692 757 Pfam Mechanosensitive ion channel 530 735 IPR006685 GO:0016020|GO:0055085
Cca03g01692 757 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 745 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01692 Cca-Chr3 36045194 36048309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01692 43 745 Mechanosensitive Ion Channel Family AT5G12080 59.887 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01692 K22048 - gmx:100803107 1352.04