Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01683 ATGCCCCCCAACATTTCACAACCAGAGGCTACTTGGTCACAATCCTTCTACACAGAAGGGGAGAAGGAACAAAACAAGCACGCTTTCGCAGTTGCTGCCGCCACAGCAGCAGTCGCTGATGCTGTTGTGGCGACAGCACGGGCTGTGATGACAGTTGTTAGGCTCACCAGCCAAGGAAGGGGTGGCACCATGTTTGGTGTTAGACCTGAAATTTGGGCTGCCATCAAGGTTCAAACAGTGTTTAGAGGATATCTGGCAAGGAAGGCATTGAGGGCCTTAAAGGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAACAACCCTCCATAGTATGCAGGCTCTTGTCAGAGCTCAAGCTACAATTAGGCCGCACAAATCACACAGCTTCATGAGCACAAAGAATGAAGCATATAGATCTCAAAATAGATCAAGAAGATCCATGGAGAGGTTTGATGGTATACTGAGAGTGAATATGCAGCTCCACACCACAGTAGAAGGGCCTAAGTCAAGGTCTAGAAGGACAATATCAGATTTTGGTGATGAACCATCGTTTCATGCACTTTCTTCTCCCTTACTAATTCCATATAGAACGCCGACACGTTTGTCTATACCAGACCAAAGGAATTTTCAGGACCCTGCATGTAGGTTATCTACGGCACAAAGCACTCCACGTTTCACAAACTCTTGTAGTTGTGGCTCAGTTGCACCTGTGACACCAAAGAGTGTGTGCACTGATAACTTGTTCCTCGGGCAATATGGGAATTTTCCAAATTACATGGCTAGTACTCAGTCTTTTGAGGCCAAAATGAGGTCTTATAGTGCTCCAAAGCAACAACCAAAACAAGGTGCATGGAGGAGGCTTTCCCTCAAAGAAATGGAGTCTAGGAATAGCTTGAGTGGGGTTAGAATGCAAAGGTCTTGCTCACAAGTTCAACAAGTCATTAATTTCAAGAATGTTGTGATGGGGAAGCTTCAGAAATCCACAGAATCTGTTAGGGAGACAGATAGAAATTACTTCTACTAG 1047 0.4537 MPPNISQPEATWSQSFYTEGEKEQNKHAFAVAAATAAVADAVVATARAVMTVVRLTSQGRGGTMFGVRPEIWAAIKVQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATTTLHSMQALVRAQATIRPHKSHSFMSTKNEAYRSQNRSRRSMERFDGILRVNMQLHTTVEGPKSRSRRTISDFGDEPSFHALSSPLLIPYRTPTRLSIPDQRNFQDPACRLSTAQSTPRFTNSCSCGSVAPVTPKSVCTDNLFLGQYGNFPNYMASTQSFEAKMRSYSAPKQQPKQGAWRRLSLKEMESRNSLSGVRMQRSCSQVQQVINFKNVVMGKLQKSTESVRETDRNYFY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01683 348 Pfam Protein of unknown function (DUF4005) 230 317 IPR025064 -
Cca03g01683 348 SMART iq_5 92 113 IPR000048 GO:0005515
Cca03g01683 348 SMART iq_5 69 91 IPR000048 GO:0005515
Cca03g01683 348 Gene3D - 69 122 - -
Cca03g01683 348 ProSiteProfiles IQ motif profile. 73 98 IPR000048 GO:0005515
Cca03g01683 348 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 152 - -
Cca03g01683 348 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 176 336 - -
Cca03g01683 348 PANTHER IQ-DOMAIN 5-RELATED 1 152 - -
Cca03g01683 348 PANTHER IQ-DOMAIN 5-RELATED 176 336 - -
Cca03g01683 348 Pfam IQ calmodulin-binding motif 97 111 IPR000048 GO:0005515
Cca03g01683 348 Pfam IQ calmodulin-binding motif 72 91 IPR000048 GO:0005515
Cca03g01683 348 ProSiteProfiles IQ motif profile. 94 121 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01683 Cca-Chr3 35968724 35970335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01683 5 311 IQD Protein Family AT3G16490 45.536 1.54e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01683 - - gmx:100797909 446.047