Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01681 ATGGAAATATGGAATACCAAAAGTGGTTCAAGAAATGAATTCAAAACAGGGTGTTTTTTCTTTACCAAAGAGAAGAAAAAAGCATATGTAGCCTTCTTcctcctccaccgccgccgccgcgctccctccgtcgccgccCACGACAAGGCCTCCGAATCGGACAGCCTCCGCCTCTTCCCGCCCTCCGACGTCGCCGAAACGAAACCTCCGCAGCAGCGGTGGAGGAGGAAGAAACTCTCTCACTTAATTCATAATGGATGTGGCTGTGACGACGCAAGAGGTCACATAAACCCCGCGGTGACGTTTGGGTTGTTTTTAGCGAGGAAGGTGTTGCTGGTGAGAGCAGTTGCTCTGACATCGAGGGACATGCTATCTGACTTCCACACTGTCAGGAAGAATTTTGACACAAAGGATTCTGCACTTGAATCCATCATCTCCCATTGTCAAATATTTATCCGAGACTCTAAGTTAGTCACCTGGTTGAAACCATCAACTTTGATACCACTATTGGGTCAAATAGTTTACACTGGGAAGCCTCCATACAATGGATAA 552 0.4221 MEIWNTKSGSRNEFKTGCFFFTKEKKKAYVAFFLLHRRRRAPSVAAHDKASESDSLRLFPPSDVAETKPPQQRWRRKKLSHLIHNGCGCDDARGHINPAVTFGLFLARKVLLVRAVALTSRDMLSDFHTVRKNFDTKDSALESIISHCQIFIRDSKLVTWLKPSTLIPLLGQIVYTGKPPYNG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01681 183 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01681 Cca-Chr3 35940847 35943747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01681 87 116 Major Intrinsic Protein MIP AT2G37170 73.333 2.54e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01681 K09872 - thj:104819653 48.1358