Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01675 ATGGCTACTCATCTTCTCAGGCTTTCTCTCTCCTCCCAACCCAAACTCTGCTTCAATTACACGCCCAATCATGTCCTCCACTTCATTTCTCCACTCCCGCCAAAACGACGTCGCAGCCGCTACCGCCATCTCCCTCCAAATTCCCGCCCACTTTTCGCCGTATCAAACTCCTTCGGGGCCGAGATTGGCTCGCCAGAATCAGCTCTTCTCCAAGGCCGCGGAGAGAGAAGAGACTCGCCGGTTCTACTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCTTGTCCGCCGATAACCGAGTCGACTCGGCCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTTCGACGGACAGACGAGGAGCCGGCGAGCGTCGCGGAGAGCCTTGCTCGGAGGCTGAGTGATTGCGGATTTCCGACGAAGATGAGAGCGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTAGTGAAGAAGAAAGAGGAATTGGTCGCTAAGAGTCGAAACCGCGTCGCTTTCGCTTGGACGCTGGTCGCATTGTGCTGTGGATCTCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGTTCACGGACCGCTTATGGAAATTCTTCATAGTTCGTACGTGAAAGGTGGTTTAGCTTTGGGTGCTCTATTGGGACCAGGACGAGAGCTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTGGTGGGATTTGGTTCTATAGCTGCTTTCGTCATTAGTTCGATCTCACTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGgtcatgcttcttggttttgtgctattgggacgttctctggaggaaaaggctaggattcaggcatctagcgatatgaatgaactgctttcactgatatctactcagtcaagacttgtgattacttcaacagaaggttcaccttctactgacactgtgctttcctctgatgcaatttgtgttgaagtcccaactgatgatattcgactaggcgattcagtgttggtgttgcctggagaaactattcctatagatggaagggtcatttcaggaagaagtcttgtagatgaatccatgcttacaggggaatcacttcctgtatttaaggagaaaggcctcacagatggtcctttaaggattgaagctacttcaactggctccaacactatgatatccaagattgtgcgcatgGTTGAggatgctcagtcacgtgaagcacctgtacaaaggcttgcagattccatagcagggccatttgtatacagtgtaatgactCTGTCAGCAGCAACATTTGCGTTTTGGTATTTTGTTGGATCGAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCTGAGGGAGATCCTTTGCTATTGAGTTTAAAACTATCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCTACGCCCACAGCAATCCTGGTTGGCACCTCACTTGGGGCAAGAAAGGGACTTCTTATTAGAGGAGGGGATGTGCTGGAACGCTTGGCTGGCATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACCAAAGGAAAACCAGTTGTGTCTGCCATAGGCTCTATCCATTATGGGGAGTCTGAAATTCTTCGGGTTGCTGCTGCAGTGGAGAAAACTGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTCCTTCCGGTCACAAAAGGGCAGTTAGTTGAACCAGGTTTTGGAACCTTAGCAGAAATAGATGGGCATTTGATTGCAGTTGGGTCTCTAGAATGGGTCAATGAGCGCTTCCAGACAAGAGCAAATCCATCTGATTTGACAAATCTGGAACATAGTTTGATGAATCATTCATCAAATACAACATCTTCAAAGTATTCGAAAACTGTTGTCTTTGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCTATATCTGACGTAGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGCAGAAGGGGATTAAAATGGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAATAGCAGATACAGTTGGTATTGAAAGTGATTTTGTCAAAACATCTTTGTCTCCACAGCAGAAATCTGGATTTATTTCATCTCTGACAGCTGCGGGACATCGTGTTGCAATGGTAGGTGATGGGATAAATGACGCACCCTCTTTGGCTGTCGCTGATGTTGGGATTGCTCTGCAGAATGAGGCTCAAGAAAATGCTGCCTCGGATGCAGCATCTATTATACTTCTGGGGAACAAAATTTCTCAAGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCGGTCGCCTATAATGTTGTTGCAATTCCCATTGCTGCTGGTGCGTTACTTCCCCAGTTTGACTTTGCTATGACACCATCACTTTCAGGAGGACTAATGGCTCTCAGCTCCATCTTCGTGGTTGGCAATTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAG 2625 0.3924 MATHLLRLSLSSQPKLCFNYTPNHVLHFISPLPPKRRRSRYRHLPPNSRPLFAVSNSFGAEIGSPESALLQGRGERRDSPVLLDVTGMMCGACVSRVKNILSADNRVDSAVVNMLTETAAVKLRRTDEEPASVAESLARRLSDCGFPTKMRASSSGVTENVRKWKELVKKKEELVAKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIVHGPLMEILHSSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFVISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLSSDAICVEVPTDDIRLGDSVLVLPGETIPIDGRVISGRSLVDESMLTGESLPVFKEKGLTDGPLRIEATSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSNIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAIGSIHYGESEILRVAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEIDGHLIAVGSLEWVNERFQTRANPSDLTNLEHSLMNHSSNTTSSKYSKTVVFVGREGEGIIGAIAISDVVREDAESTVMRLKQKGIKMVLLSGDREEAVATIADTVGIESDFVKTSLSPQQKSGFISSLTAAGHRVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGALLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRK 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01675 875 Pfam Heavy-metal-associated domain 83 146 IPR006121 GO:0046872
Cca03g01675 875 Pfam haloacid dehalogenase-like hydrolase 537 768 - -
Cca03g01675 875 PANTHER ATP7, ISOFORM B 80 867 - -
Cca03g01675 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 543 549 IPR018303 -
Cca03g01675 875 SFLD C1.7: P-type atpase like 524 807 - -
Cca03g01675 875 SUPERFAMILY HAD-like 539 862 IPR036412 -
Cca03g01675 875 CDD HMA 83 147 IPR006121 GO:0046872
Cca03g01675 875 Gene3D - 75 153 - -
Cca03g01675 875 Pfam E1-E2 ATPase 334 521 - -
Cca03g01675 875 Gene3D - 532 805 IPR023214 -
Cca03g01675 875 PRINTS P-type cation-transporting ATPase superfamily signature 541 555 - -
Cca03g01675 875 PRINTS P-type cation-transporting ATPase superfamily signature 382 396 - -
Cca03g01675 875 PRINTS P-type cation-transporting ATPase superfamily signature 677 688 - -
Cca03g01675 875 PRINTS P-type cation-transporting ATPase superfamily signature 699 709 - -
Cca03g01675 875 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Cca03g01675 875 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Cca03g01675 875 SUPERFAMILY Calcium ATPase, transduction domain A 343 424 IPR008250 -
Cca03g01675 875 CDD P-type_ATPase_HM 181 864 - -
Cca03g01675 875 SFLD p-type atpase 524 807 IPR044492 -
Cca03g01675 875 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 253 865 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca03g01675 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 285 824 IPR023298 -
Cca03g01675 875 Coils Coil 161 181 - -
Cca03g01675 875 Gene3D - 552 685 IPR023299 GO:0000166
Cca03g01675 875 Gene3D - 305 428 - -
Cca03g01675 875 SUPERFAMILY HMA, heavy metal-associated domain 81 147 IPR036163 GO:0046872
Cca03g01675 875 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 339 846 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01675 Cca-Chr3 35896848 35906660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01675 244 866 Primary Pumps ATPases AT1G63440 36.449 9.72e-108 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01675 K17686 - gmx:100127402 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01675 03 35896848 35906660 Cca03g01675 03 35896848 35906660 ECH