Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01667 ATGATGCACATGACCTTTTATTGGAGCAAGAACGTCACTCTTCTAATCGGTTCATGGAAGACCAACGATTGGACCGAGTATATCCTCTCCTTGTTCGCGTGCCTCGTCGTTTCCGTTTTCTACCAGGTTCTCGAGAATCGCCGCATCCGCCTCAAGCTCATCGGCGCCGGAAAGCCCTTCCCGCCGGAGATCGAGACCCCTCTGCTGCGCCGGAAGCTCGCCGGAAACCGCGCCAAGGTGGCCGGAGCGTTTCTCTTTGGCCTCAGCTCCGCGATCGGGTATTTGTTGATGTTGGCCGTTATGTCCTTTAACGGAGGGGTCTTCGTCGCCATCGTCGTGGGTCTCGCTATTGGTTACTTCTTCTTCAGGAACGAGGGCGAAGATTCCCTTATCGTGGACACTTCTTGTGCTTGTGCTTAA 420 0.5476 MMHMTFYWSKNVTLLIGSWKTNDWTEYILSLFACLVVSVFYQVLENRRIRLKLIGAGKPFPPEIETPLLRRKLAGNRAKVAGAFLFGLSSAIGYLLMLAVMSFNGGVFVAIVVGLAIGYFFFRNEGEDSLIVDTSCACA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01667 139 Pfam Ctr copper transporter family 4 122 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca03g01667 139 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 139 IPR007274 GO:0005375|GO:0016021|GO:0035434
Cca03g01667 139 PANTHER CTR FAMILY COPPER TRANSPORTER 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01667 Cca-Chr3 35790001 35790420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01667 1 139 Inorganic Solute Cotransporters AT5G20650 50.685 3.08e-47 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01667 K14686 - gmx:100815028 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01667 03 35790001 35790420 Cca03g01667 03 35790001 35790420 ECH
Cca03g01667 03 35790001 35790420 Cca05g00456 05 9998276 9999204 ECH
Cca11g02548 11 52631772 52632595 Cca03g01667 03 35790001 35790420 ECH
Cca11g00417 11 5725557 5727845 Cca03g01667 03 35790001 35790420 ECH