Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01666 ATGAGTTCTAAAAAGATTACATGGAAGTCTTTTGTGTTGATCTTAAGTTGTTACAAGACTCAATGTTCCTTGGAGGAATCAGAAAAAGAGGTTTTGAAACATGGTTCCTTCCAAAGGTTATGTCTCTCGGATATAAGCATTCCTAGCTCCCCTCAGGCAATTGAAGATCTTTCTATTTCCCTGGTTGGTCCAAAGCTTTACACATTCACACTAGATGAGCTGAGGGAAGCAACACATAATTTCTCATGGAGTAATCTTCTTGGTGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTTGATGACACACTTAGACCTGGTTTGAAGGCTCAGTCTATAGCTGTGAAACGACTTGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCGGAAATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTAAAGTTAATTGGGTACTGTTGTGAGGAGGAACACAGGCTTTTGGTGTATGAATACATGGCAAGAGGCAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCGGCCTTACCATGGTCAACCAGGATGAAGATAGCATTGGGTGCAGCTAAGGGTTTGGCCTTCCTTCACGAAACAGATAAACCTGTAATATACAGGGATTTCAAGACTTCAAATATCTTACTAGATTCGGATTACACTGCTAAATTATCAGACCTAGGGCTTGCTAAGGATGGTCCTGAAGGGGAAGAAACACATGTAACAACAACATGCATAATGGGAACCCGAGGCTATGCTGCTCCTGAGTACATCATGTCTGGTCACCTTTCCACCAAGAGTGATGTATATAGCTATGGAGTGGTTTTGTTGGAATTGCTAACGGGAAGAAGGGTAGTGGACAAGACCCGACCCAATCGAGAGCGAAGCCTGGTCGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGAAAGCTGCTCCATATAATAGACCCAAGATTGGAAGGGCAGTTTCCTATGAAAGGAGCTTTAAAAGTTGCTGCATTGACCTATAAATGCTTGAGCCACCACCCCAATCCAAGGCCCAATATGAGTGATGTGGTAAAGATATTAGAGTCACCTCAGGATTTTGAAGATGTCATCATAGGACCGTTTGTGTATGTGGCGGTAAGTGAAAGTAGCCAATGA 1152 0.4349 MSSKKITWKSFVLILSCYKTQCSLEESEKEVLKHGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLDELREATHNFSWSNLLGEGGFGPVYKGFVDDTLRPGLKAQSIAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIALGAAKGLAFLHETDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTRGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGRRVVDKTRPNRERSLVEWARPLLRDQRKLLHIIDPRLEGQFPMKGALKVAALTYKCLSHHPNPRPNMSDVVKILESPQDFEDVIIGPFVYVAVSESSQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01666 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cca03g01666 383 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
Cca03g01666 383 CDD STKc_IRAK 87 360 - -
Cca03g01666 383 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Cca03g01666 383 PANTHER OS01G0588500 PROTEIN-RELATED 21 381 - -
Cca03g01666 383 ProSiteProfiles Protein kinase domain profile. 81 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01666 383 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Cca03g01666 383 PANTHER KINASE 1B 21 381 - -
Cca03g01666 383 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01666 Cca-Chr3 35789867 35793168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01666 68 359 Glycoside Hydrolase AT3G07070 52.542 5.13e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca03g01666 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01666 - - gmx:100805771 702.59