Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01662 ATGGCCTTGAACTTCAACATTCATGATCCATCACACCACAACCAGGACCAAAGTAAAAAACGAAAGTTCGAAGATGTTGATGATTATTCATGCCTGGAATCACCGTTTTCCACCATGAACCCCAGAAGGTATCAGATAGAGGTGTTTGAAGTTGCAAGACAGAGGAACACAATAGCAGTGTTGGATACAGGCTCCGGCAAGACCTTGATTGCTGTGATGCTATTGAAAGAGGTTGGTCAAGAAATCAAGACTAGTGGTGTAAAGAAGCTGATTGTTTTCATGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAAGAATATAAAACATCTGACAGATTTTCAAGTTGAGGAATACTATGGAGCTAAAGGAGTTGATGCATGGAATTTGAAGACGTGGGAGAAAGAGATTAGTAACAATGATGTACTGGTTATGACACCCCAGGTTCTTTTGAATGCCTTAAGAAAAGCATTCTTGCGTATAGAAATGATAAGCCTGATAATTATTGATGAATGTCATAGAGCTATTGGCAACCATCCCTATACACAAATAATGAAGGAATTTTATCACCAAGCTGACAAAAAGCCAAAAATTTTTGCGATGACAGCATCACCGGTAGGAAAAAAAGGTGTTACCTCTACTATGGATTGTGAGGATCAGATATCTGAACTTGAAAGCATTTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATTGATAGATGTATCCCTTCTGCTAAAGAGAGTTGTATATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAACCTAAGATTGAAGCCCTGTGGGTCAAGATGGATGCATTATTATCAGAAAATCATAGTAACTATAAGGATGTGGACAATAAATTTAAGACGATGAATCAGCGGATGTCCAATGAACTTGCGAAAATTATCCATTGCCTTGAAGATCTTGGGCTCCTTTGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTCTCCAAAATTGAAGGAGAGTGTGAAATTTACCGTAAAGGTTATCTCCAGTGTATAACTATTTTTGAAGAAGTAATCAAAATAATAGAAGAATCCCTCCATCTTGCTGATAAAAAGATTTTGGGGGATGACTTTGACTATTCAAAGGCAGAAGATTTGGGATTCATATCACCAAAATTACTTGAACTCATTCAACTTTTCGAGTCATTTGGAGAATCTAGTCAGGTTTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTCATAAAGAAAGTTCCCCAGATTTCTCATCTCACAGTTTCCTATTTAACTGGAAACACTACTTCGGTGGATGCTCTGGCTCCTAAGAGGCAGAAGGAGATATTGGACTGTTTCCACTCTGGAAAGGTCAATTTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCGAAACTGCTCTTGTGTGATACGTTTTGACCTCCCCAAAACAGTTCGTAGTTATGTCCAATCACGTGGAAGATCTAGGCAGGCTAACTCGCAGTATGTTTTGATGTTGGAGAGGGGGAACTTGAAGCAACGAAATCAACTCTTTGACATCATTAGGAGTGAGCGATTTATGAATGATGCTTCTATTAAAAAAGACCATGAATATAGTACAAGGGCATTAATTACGGAGAAAATAGATACATACTATGTGGAATCTACTGGAGCATCTGTCACTTTAGATTCCAGTGCTAGTCTTATCATCCAATACTGTGGAAAGCTCCCACGAGATAAGTACTCCTGTGCAAAGCCCAGTTTTGAGTTTATGCCTGTGGAAGGGGGTTACAAATGTACGTTGATATTACCACCTAATGCAGCTATTCAAGCAGTAACTGGTTCTCCAGGAAAAGATATTCGTTTGGCGAGGTGTCTTGCTTGTTTTGAAGCTTGTAAGAAGCTACATCAAATTGGTGCCTTAAATGACCATCTGGTTCCATTCACTGAAGATCCTTCAGATGATGACCATATTGTGCAAAACAAAGACTCGAGTTCTGGTGCAGGAACCACAAAAAGAAAAGAGTTACATGGAATGGCCAGCATTCGTGCATTAAGTGGTGCATGGGGAGACAAACTGGATGGAGCCAAATTTCATGCCTATAAATTTGAATTCTCATGTAATATTGTTAGTGAAATATACTCCGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATGTAGAATTAGATCTTTATTTAGTCTCAAAGATAGTTAGAGCTTCCGTGTCTTCATGTGGGCAAGTTGATTTAAATGCTGAACAGATGATGAAAGCAAAATGCTTCCATGAGCTCTTTTTCAACGGCTTGTTTGGAAGATTGGTTTCTAGGTCCAAATCAGCTGGAGGGAAAAGTGAATTTTTACTTCAGAAAGACACAAAATCACTGTGGAATTCAAAACTCTTATATTTGCTTCTACCACTTGAGAAATTGAATGATACATGTGGGGAATCTTTGCAAATAAATTGGTTTGGAATCAATTCTTGTGCTGCTGCTATTGAATTTTTAAGGAGAAAATTTTCTTTGGTCACTAAAGATTGTGGTGATAATGGCACAATCACAACTCCTCCTGATACAAGGTCATCAGAGATGGAATGTGAAGGAACAAACAGTATTCACTTTGCTAATTGTGTGCTGGGCGTTAATAATATAAAAGACACGATAGTTTTGGCCATTCACACCGGGAAAATATATTGTATTCTTGAGATTGTTCGTAACCTATCCCCTGAAAGTCCCTTCGATGGAAACAAAGAAAAATCAAAGGAATTCATAACCTTCTCGGATTATTACAGTGAAAGGTATGGGATTACACTGAAACATCCAGGACAATCTTTGTTACGTTTGAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTCTACGGAGATGCACGAGACAAGTCATCACAAAAGGGCCCTGCAACCTCAAAAATGCCAGCACATGTTCACATTCCACCTGAGCTTCTATATGTTCTTAATGTTAAAAGAGATGTATTGAAGTCAATGTACTTGCTGCCATCTCTGATGTACCGCATTGAATCTTTTATGTTATCCAGTCAGCTTAGAGAAGAAATAGATGGTCAAACTAGCAAGTCCAACATACCTAGCTCACTGATTCTAGAAGCACTCACCACTTTGAGATGTAATGAAAAATTTTCAATGGAACGTCTCGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTTAGCTGTCACCTATTTCTAAAATATCCTAAGAAACACGAAGGACAATTATCTGCCAGACGATCATGGACTATTTGTAATTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCTGGACAACATTCTATATACACTTTTCATTGTGGTTGTGGGTTAGAAACCTCAGAAGTGCCTTTAGATGGAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGCTCGAAGACTATTTCTGACTGTGTTGAAGCTTTGATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCGTCACTTAATGTGATGAAATGGCTTGGAATTGGTGCTGAACTTGAACTATCCTTGGTTGATGAAGCAATCACTGCTGCATCTCTGCATACAAGTGTGCCAAAAGAAAGTATTGCTAGCCTTGAAAAGAAAATAGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAAGTTGGGACTGGTTGTTATGAGCGGCTTGAATTTCTCGGAGACTCGGTGTTGGACCTGCTTATCACATGGCATCTTTATGAAAGTCACACAGTTGTTGATCCAGGGGTGTTGACTGACTTACGCTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAATCTTCACCAGCACCTTCGACATAGCTCTGGATTGTTAATGAGTCAGATATCAGAATATGTGAAGGTCAATTCTGAATCAGATCCCAAATCACTCCCAAGCGTTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATTCCAAGCTCAGTCTTGATGAAGTCTGGAAGGCTTTCTATCCTTTATTGTCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGTATTTTGTAAAAGTAAAAGAAAATTCTGAAAAGAAGGGAAGCACAACACATGTTGAGGTTAGTGTACAGCTGCCAAACGCCTTATTGGCTAAAGTAGCATATGGGGCTAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTACTGAAGGAACTTGAGAAGAGGGGAATCTCACATGGTAGTTTTGTGTCCAAGGGAAAAAGAGATAATCCTGACCATATCAAAGATTCATCGACTAAAAGGCCCAGCTTGGATGAAACTAACTTAACTGCAATTAATATATCAATTAATATGAAGAAGGGAGGACCACGGACCACACTATTTGAAGTGTGTAAGAAACTACAGTGGCCAGTGCCTTCATTTGATTCAACAGAATATAAAGACAGATCTTTATTTAAATCCTGCGAAGCCCTGGAAGGAAGCAAGGGACTTAACTGTTTTGTGTCGAAAATTACCTTGTGCATGCCTAATTATGGTAATATAGAATGCAAAGGAGAAGCCAGAGGTGACAAGAAGAGCTCCTGCGACTCCGCTGCAGTTGAAATGCTTCTTGAGCTACAAAGACTCGGAAAAGTTTCGATTGATTCTCCACTTTCTTCTTAG 4887 0.3904 MALNFNIHDPSHHNQDQSKKRKFEDVDDYSCLESPFSTMNPRRYQIEVFEVARQRNTIAVLDTGSGKTLIAVMLLKEVGQEIKTSGVKKLIVFMAPTVHLVNQQFKNIKHLTDFQVEEYYGAKGVDAWNLKTWEKEISNNDVLVMTPQVLLNALRKAFLRIEMISLIIIDECHRAIGNHPYTQIMKEFYHQADKKPKIFAMTASPVGKKGVTSTMDCEDQISELESILDSQRYTVEDRTEIDRCIPSAKESCIYYDQARFSALSLKPKIEALWVKMDALLSENHSNYKDVDNKFKTMNQRMSNELAKIIHCLEDLGLLCAYEAVKICHENFSKIEGECEIYRKGYLQCITIFEEVIKIIEESLHLADKKILGDDFDYSKAEDLGFISPKLLELIQLFESFGESSQVLCLIFVDRIITAKVIERFIKKVPQISHLTVSYLTGNTTSVDALAPKRQKEILDCFHSGKVNLLFTTDVLEEGIHVRNCSCVIRFDLPKTVRSYVQSRGRSRQANSQYVLMLERGNLKQRNQLFDIIRSERFMNDASIKKDHEYSTRALITEKIDTYYVESTGASVTLDSSASLIIQYCGKLPRDKYSCAKPSFEFMPVEGGYKCTLILPPNAAIQAVTGSPGKDIRLARCLACFEACKKLHQIGALNDHLVPFTEDPSDDDHIVQNKDSSSGAGTTKRKELHGMASIRALSGAWGDKLDGAKFHAYKFEFSCNIVSEIYSGFVLLIESKLDDDVGNVELDLYLVSKIVRASVSSCGQVDLNAEQMMKAKCFHELFFNGLFGRLVSRSKSAGGKSEFLLQKDTKSLWNSKLLYLLLPLEKLNDTCGESLQINWFGINSCAAAIEFLRRKFSLVTKDCGDNGTITTPPDTRSSEMECEGTNSIHFANCVLGVNNIKDTIVLAIHTGKIYCILEIVRNLSPESPFDGNKEKSKEFITFSDYYSERYGITLKHPGQSLLRLKQSHNPHNLLFNFYGDARDKSSQKGPATSKMPAHVHIPPELLYVLNVKRDVLKSMYLLPSLMYRIESFMLSSQLREEIDGQTSKSNIPSSLILEALTTLRCNEKFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSWTICNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQHSIYTFHCGCGLETSEVPLDGKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHTSVPKESIASLEKKIGYEFSVKGLLLEAITHLSEKEVGTGCYERLEFLGDSVLDLLITWHLYESHTVVDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLRHSSGLLMSQISEYVKVNSESDPKSLPSVRAPKALGDLVESIAGAILIDSKLSLDEVWKAFYPLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKENSEKKGSTTHVEVSVQLPNALLAKVAYGANKKTAKGEAAFHLLKELEKRGISHGSFVSKGKRDNPDHIKDSSTKRPSLDETNLTAINISINMKKGGPRTTLFEVCKKLQWPVPSFDSTEYKDRSLFKSCEALEGSKGLNCFVSKITLCMPNYGNIECKGEARGDKKSSCDSAAVEMLLELQRLGKVSIDSPLSS 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01662 1628 Pfam Ribonuclease III domain 1071 1205 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 Pfam Ribonuclease III domain 1281 1387 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 SMART helicmild6 419 509 IPR001650 -
Cca03g01662 1628 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 576 666 IPR005034 GO:0016891
Cca03g01662 1628 ProSitePatterns Ribonuclease III family signature. 1281 1289 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 Pfam Helicase conserved C-terminal domain 393 506 IPR001650 -
Cca03g01662 1628 SUPERFAMILY PAZ domain 897 1009 IPR036085 GO:0005515
Cca03g01662 1628 CDD SF2_C_dicer 385 517 - -
Cca03g01662 1628 ProSiteProfiles Ribonuclease III family domain profile. 1034 1206 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 MobiDBLite consensus disorder prediction 1488 1510 - -
Cca03g01662 1628 SMART riboneu5 1053 1226 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 SMART riboneu5 1261 1411 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 MobiDBLite consensus disorder prediction 1488 1511 - -
Cca03g01662 1628 Pfam Type III restriction enzyme, res subunit 41 205 IPR006935 GO:0003677|GO:0005524|GO:0016787
Cca03g01662 1628 Gene3D - 383 543 IPR027417 -
Cca03g01662 1628 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01662 1628 SMART PAZ_2_a_3 876 1033 IPR003100 GO:0005515
Cca03g01662 1628 Gene3D paz domain 884 1007 - -
Cca03g01662 1628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 521 IPR027417 -
Cca03g01662 1628 Pfam Dicer dimerisation domain 576 661 - -
Cca03g01662 1628 Pfam PAZ domain 898 1029 IPR003100 GO:0005515
Cca03g01662 1628 ProSiteProfiles Ribonuclease III family domain profile. 1246 1388 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 550 IPR001650 -
Cca03g01662 1628 SUPERFAMILY RNase III domain-like 1245 1408 IPR036389 GO:0004525|GO:0006396
Cca03g01662 1628 PANTHER DICER-RELATED 39 1619 - -
Cca03g01662 1628 ProSiteProfiles PAZ domain profile. 898 1009 IPR003100 GO:0005515
Cca03g01662 1628 CDD DEXHc_dicer 39 237 - -
Cca03g01662 1628 Gene3D Dicer dimerisation domain 571 668 IPR038248 -
Cca03g01662 1628 SMART ultradead3 37 241 IPR014001 -
Cca03g01662 1628 CDD RIBOc 1053 1217 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 Gene3D Ribonuclease III domain 1036 1217 IPR036389 GO:0004525|GO:0006396
Cca03g01662 1628 Gene3D Ribonuclease III domain 1234 1408 IPR036389 GO:0004525|GO:0006396
Cca03g01662 1628 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 223 IPR014001 -
Cca03g01662 1628 CDD RIBOc 1262 1409 IPR000999 GO:0004525|GO:0006396
Cca03g01662 1628 Gene3D - 1537 1616 - -
Cca03g01662 1628 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 39 1619 - -
Cca03g01662 1628 Gene3D - 36 275 IPR027417 -
Cca03g01662 1628 SUPERFAMILY RNase III domain-like 1046 1224 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01662 Cca-Chr3 35725228 35740912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01662 407 506 Eukaryotic Initiation Factors Gene Family AT3G19760 33.010 7.06e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01662 K11592 - gmx:100806831 2693.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01662 03 35725228 35740912 Cca03g01662 03 35725228 35740912 ECH