Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01661 GTGAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGACTATCTTGCTGTAAATGTTGAACGTTACACAAAGACGAAAAAGAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCAATTGAAGTATTGGAGCTTGAGAATAAGAATGACAAGATTATTGCATTTGCTTGGGAGCCAAAAGGCCACAGGTTTGCGGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTACTCCATGCGAACTGCACAGAACACTGGCAGGGTTTCAAAGCTCACTACCCTGAAAGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCAGGTCGCTACATTGTATTAGCTGGGTTGAAAGGTTTCAATGGACAGTTGGAATTTTACAATGTTGATGAACTTGAAACTATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGATATGTTGCAACTTCTGTAACTTCAGTGCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTGTATCGAATTCTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGGCCACCATCTTTCCTAAGTCCAGAGAAAGAAGAAGAGATTGCCAAGAACTTGAAGAAGTATAGCAAGAAATATGAGGCAGAAGATCAAGATGTGTCATTGCTGCTGAGTGAACAGGAGCGCGAGAAGCGTAGGATGTTGAAAGAAGAGTGGGACAAGTGGGTTAATGAATGGAAGCGGTTGCACGAAGATGAGAGTTTACAGAGACAAAAGCTTAGAGATGGAGAAGCTAGTGACGAGGAGGAGGAATACGAGGCCAAGGACATCGAAGTGGAGGAAGTGATTGATGTAAAACAAGAGGTGCTTCACCTTGAGTATGGCCAAGATGTTGCTGAACTTAAACCGCAACACATTACACATACCAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCGTTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGGCAGTGCCATCAACTGCTCCTTTTGCTGGTCTGGTTATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAATATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGTACAGTTTTGCTGGACGTAAGTTTGAGCATGCATTGAAGCATGGAGCAAAAAGTGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAAGAAAAATGTGAGGTTGACTGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACATGCACTTTGACAATTTTAGACTTCTCGCTGAGTATACAAATGCTGAAAATCATTGTCTTCCTGCAAGAATCCACCAAACCAAGCAAGCAAATAGTGTTGAAGAACTTCAAAGATTCTCTGGGAGAGAGTCTATCAGAAATTCTGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCCGAATTGCAGAACAAGGTTATTGAGACGGTTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCAATTCAAAGATATATTGGATACTCTAGTAACCTCATTACTCCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGCGCAAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTAATGCTAGAAGATATTCGTAGTGGAAATTCAGGGAAGGAAGTAATGAAGCGAAAAGTCAGTGACAATGTTCCAGACAATGAAAGTGAATTTGGTTATGAAGAAAGGCAACAGATAGTGAATTCTGCAAAAAATGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCAAACAACCTTCTAGACTCTATCAGCTGGTCCATTTCAGAACCGACTTCAACTGCTTCCATTTACACAGACTCTTTCAGTGTCGAAGATCCTAGTGAAAATCATACCACTCCAATATTTTTCGACGCAAAAGGGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGATATTTAAAAATCATTTCCTTACCATACTCTTCCCAGTTGACCGATTTGCCGAGATGGGTCCTTCTTCAAGAACGTTTTTCAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATTCATGCTTTTTATCAGGAGAACATGCCAAGGCAGGAAATAGAAGTTGCAATTCATAGCGATTCAAGACACGCAGATAGGCTTAGATCAGTGTACTCAAGTAGGGAAACAGCAGAACGTGGCTATGTAATGTTCAAACGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTAAAGCGTGTAACTGGGGACAACAACTCCAACGTTTATGAACTATTACTTAGGGCTTAA 2622 0.4203 VSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRLHEDESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVKQEVLHLEYGQDVAELKPQHITHTRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSSVAVPSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVYSFAGRKFEHALKHGAKSGLFVVTLGWFVDSVKKNVRLTESHYRVKSYGDNNMHFDNFRLLAEYTNAENHCLPARIHQTKQANSVEELQRFSGRESIRNSDSTLSGCSIYVDPGISSELQNKVIETVSREGASLVEQWFVGCNVSHVVTEGTSIQRYIGYSSNLITPLWILKTAKEKYAQRLVHMSVDLAKQVGLMLEDIRSGNSGKEVMKRKVSDNVPDNESEFGYEERQQIVNSAKNGVRNRRGRRMQTCQTPIRPITPNNLLDSISWSISEPTSTASIYTDSFSVEDPSENHTTPIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPVDRFAEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMPRQEIEVAIHSDSRHADRLRSVYSSRETAERGYVMFKRVEFLGSRTSFEMLKRVTGDNNSNVYELLLRA 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01661 873 ProSiteProfiles BRCT domain profile. 380 471 IPR001357 -
Cca03g01661 873 Pfam Family of unknown function (DUF6699) 780 857 IPR046522 -
Cca03g01661 873 ProSiteProfiles BRCT domain profile. 525 603 IPR001357 -
Cca03g01661 873 SUPERFAMILY DPP6 N-terminal domain-like 25 205 - -
Cca03g01661 873 Gene3D BRCT domain 383 473 IPR036420 -
Cca03g01661 873 Gene3D - 19 236 IPR015943 GO:0005515
Cca03g01661 873 Pfam Eukaryotic translation initiation factor eIF2A 15 215 IPR013979 -
Cca03g01661 873 Pfam twin BRCT domain 388 442 IPR001357 -
Cca03g01661 873 SUPERFAMILY BRCT domain 384 472 IPR036420 -
Cca03g01661 873 MobiDBLite consensus disorder prediction 727 746 - -
Cca03g01661 873 SMART BRCT_7 527 603 IPR001357 -
Cca03g01661 873 SMART BRCT_7 382 461 IPR001357 -
Cca03g01661 873 CDD BRCT_TopBP1_rpt2_like 384 461 - -
Cca03g01661 873 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 338 873 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01661 1 322 Eukaryotic Initiation Factors Gene Family AT5G27640 83.901 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01661 - - gmx:100815253 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01661 03 35705717 35723509 Cca03g01661 03 35705717 35723509 ECH