Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01657 ATGGACATGGAGAAGCATGCCATGGATGGTGGTAGTGATTCTAACACTAGTCCATCTTCTAGTGTTAATGAAAATAAGAACAAGGCATACAAAGGGGTCAGATTGAGAAAGTGGGGGAAGTGGGTTTCTGAAATTAGGCTTCCGAATAGCCGTGAACGCATATGGCTAGGGTCTTATGACTCACCTGAAAAGGCTGCACGAGCCTTCGATGCTGCACTTTACTGTCTACGTGGACGCCACGCCAGCTTCAACTTCCCCAACACACCTTGCAACATGGAAATCAATGTGGCTGTGCCTCTCACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACCAGGACCCACTGCTACCAAAGCCTCTTGATAATAATATGAATCAAGAACGTAGTGATGGTTGTGGTGCTAGTTCATCACTTGGATCCAAAATATCTTAA 441 0.4558 MDMEKHAMDGGSDSNTSPSSSVNENKNKAYKGVRLRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHASFNFPNTPCNMEINVAVPLTPQEIQEVAAKFANQDPLLPKPLDNNMNQERSDGCGASSSLGSKIS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01657 146 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 MobiDBLite consensus disorder prediction 10 27 - -
Cca03g01657 146 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Cca03g01657 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 15 128 - -
Cca03g01657 146 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g01657 146 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Cca03g01657 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 128 - -
Cca03g01657 146 MobiDBLite consensus disorder prediction 121 146 - -
Cca03g01657 146 MobiDBLite consensus disorder prediction 116 146 - -
Cca03g01657 146 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01657 Cca-Chr3 35663915 35664355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01657 30 114 AP2-EREBP Transcription Factor Family AT1G74930 76.471 1.43e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01657 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01657 - - gmx:100817386 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01657 03 35663915 35664355 Cca03g01657 03 35663915 35664355 ECH
Cca03g01657 03 35663915 35664355 Cca05g00453 05 9881595 9882520 ECH