Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01652 ATGGAGAATGATTGTATAGAGGACATGGACATTGAGGCCGTTCCTTCAATGTGGCCTGAAGATATTGGAACCGAGGTTGGAAAGCAGTTCAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGACCCAACTATAGTTGATTTCAAACGTCTAATGGAGCTGACAAATTTTACAGAAAAAGGGTCTTCTCAGTTGGCATACCTAATGAAACAATGGGAGTACAAGCAGGCCAATGTTGTGCGCCTTCTGAGGGAAGAACTTGACAACCTAAGCAAACAAAGGCAAGATGTTGAGCTCAGGAAGTTGGAGATTTTGGAAGAGCACCGGTTCGAGGAAGAACGTTATGGGGGTGATAAACGCCCGGTTTCTATATTGGATGATGTTTATGATGGTATATGGCATGATATACCATGCAGGAAGAGTGATGTTGTGGTTCAAAGCAAGAGGAGTGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCTTTGCATTTGGAAAAGCAGCTTGAGGCAAGTATCCAAAGAGAACAAATACTTGAAGATAAGTTGCTAGAGAGTATAGCAAATATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAAATTCTCAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCTCCTGTTGTTATTGGCCATCAGGACAAAGAGCTGCGCTACTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTCGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTTTTGGAAAAAGGGTTACCTGCGAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCCAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAACTACATGGGAATGGATGTAACCGATCAGGTGCGAAAAAGAGAAAGAATGGCAAAGATTCGAGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAGAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTGATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACCGCTGCGGCTTCATTGCAAAAAATGTTAACTTTAGAAGGACAGGTGGCAGATGATGTACCTATTGAGGTTATTGGTGATGTATTGAGGATGCGGCAAATTCTCACAAATTTAATTAGCAACGCCATCAAGTTTACTCATGAAGGCAAAGTTGGGATAAACCTTTACGTTGTGCCAGAGCCTACATTTGCAAAAGCAGAATGCATCCAAAAGATGACTCCAAACCAGTCAACTATTTCAATGAATGGTGTGAAAGAAGATAAGTATCTCTCAACACCACAAAGTGGCTGTGATCGAAATCTTCTTGATGGTTGTCAGAAACATGGCGATCGCCTCAGCCAAAATCATGCATTCAATGAAGAATGTAGATCTCCAGTTAAAAGCGAATGCTCAATGAACGGAGACACAGAGGAGCAACCTCATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACTTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAATATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATCAATCTGATGATCCGGATGAGCTTTCTGATGTGGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTATTCTCTTCTAATGGATCTAGCAGGACACAGAAGTTGCTACCACAGAAAATTGGCTACACCAGCTCACATAAACTCGGATTTTCTGAGAGCTTATTCCCCTCCAATGATATCATGTCAAAAGGGATATGTTCCCTTGATGATGCATCTTCAGTGGTTGATACTCTGGAGATGTCTGAATCAGCTAGTTCTTGTGGTCACAGTCCAGAAGCAAAGAACAAAAATTTAGTTAGAAGAGATAAACAGCATCAAGATAAGGCTCATGTTTGGTCCCTGAATGGTTATGCAGATTCCTCTGAAGCTACTGTGGCCAATAGAGAAATGGTTGTAGCAACGAAGTCTAGTGAACACCAACAAACATGTCAGGGTCAAGGAAAGGCAAACACAACTACCAAATGTGTTACAAGCAGCAGCACATCAGAAGTAACCAAATCCACATTGAAGCCTAAGATCCTACTAGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAATTAGGTCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAACGATGCACTTATGACCTGGTTCTGATGGATGTTTGCATGCCAATTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTTGAGGAAACAGGCACTTGGGATGCTGCAAGAAATGCTGGAATCGAGCAATGTCTACCAGATTCAGATTATGAATGTTCTGTACTATCTACAAAGCGGATCCCCATTGTTGCCATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACTTTCCAAAAACTGAAAGAGTGTATTGAACAATACCTGTAA 3033 0.4118 MENDCIEDMDIEAVPSMWPEDIGTEVGKQFNIEKPGRDQDMLEEVTIIEDPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDVYDGIWHDIPCRKSDVVVQSKRSEIDAEYDTVMYWKQRALHLEKQLEASIQREQILEDKLLESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNRTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGQVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVPEPTFAKAECIQKMTPNQSTISMNGVKEDKYLSTPQSGCDRNLLDGCQKHGDRLSQNHAFNEECRSPVKSECSMNGDTEEQPHSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGQLTVSSKEHHGSTFTFILPYKVSIACDQSDDPDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTQKLLPQKIGYTSSHKLGFSESLFPSNDIMSKGICSLDDASSVVDTLEMSESASSCGHSPEAKNKNLVRRDKQHQDKAHVWSLNGYADSSEATVANREMVVATKSSEHQQTCQGQGKANTTTKCVTSSSTSEVTKSTLKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRCTYDLVLMDVCMPIMNGLQATKLIRSFEETGTWDAARNAGIEQCLPDSDYECSVLSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01652 1010 CDD REC_hyHK_CKI1_RcsC-like 868 1006 - -
Cca03g01652 1010 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 675 IPR003594 -
Cca03g01652 1010 CDD HATPase_EvgS-ArcB-TorS-like 484 674 - -
Cca03g01652 1010 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Cca03g01652 1010 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Cca03g01652 1010 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Cca03g01652 1010 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Cca03g01652 1010 SUPERFAMILY CheY-like 866 1010 IPR011006 -
Cca03g01652 1010 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 1009 - -
Cca03g01652 1010 Gene3D - 858 1010 - -
Cca03g01652 1010 Gene3D - 434 680 IPR036890 -
Cca03g01652 1010 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Cca03g01652 1010 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 362 433 IPR036097 GO:0000155|GO:0007165
Cca03g01652 1010 Pfam Response regulator receiver domain 868 935 IPR001789 GO:0000160
Cca03g01652 1010 SMART REC_2 866 1006 IPR001789 GO:0000160
Cca03g01652 1010 Coils Coil 88 115 - -
Cca03g01652 1010 Gene3D - 354 433 - -
Cca03g01652 1010 MobiDBLite consensus disorder prediction 776 800 - -
Cca03g01652 1010 ProSiteProfiles Histidine kinase domain profile. 375 677 IPR005467 -
Cca03g01652 1010 SMART HKATPase_4 479 677 IPR003594 -
Cca03g01652 1010 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Cca03g01652 1010 Gene3D PAS domain 210 345 - -
Cca03g01652 1010 ProSiteProfiles Response regulatory domain profile. 867 1010 IPR001789 GO:0000160
Cca03g01652 1010 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 675 IPR036890 -
Cca03g01652 1010 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01652 Cca-Chr3 35562950 35568598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01652 1 1010 Histidine Kinase Gene Family AT5G10720 57.806 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g01652 HATPase_c 6.4e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01652 - - gmx:100819520 1789.24