Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01648 ATGGCTTCCAAGCTCTGCGACTCTTGCAAATCCGCCACCGCCACCTTGTATTGCCGCCCTGACGCCGCCTTCCTCTGCGGCGCCTGCGACTCCAAGGTCCACGCCGCTAACAAGCTCGCCTCGCGTCACCCGCGCGTCACGCTCTGCGAGGTCTGCGAGCAGGCTCCGGCGCACGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCCTCGCCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCCTCCCGGTCACTCCATTCTTCGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCGATCAACTTCCTCGACGAGCACCGCTTCTTCTCCGATGCCGACGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCCTCCTGGTTGCTCCCCAATCCCAAGACAGATCTAAATTCCTCTCCTTACTTGTTCTCCGAATCCGATCCGGTTCCTTACATAGATCTGGATTACGCCGCAGTGGATCCGAAGGCGGAGCAGAAAAGCTCCGGCACCGCCGACGGCGTCGTTCCGGTGCAGAGCAACTTCGAGCCTTTCACCTATGGTTACAAGTTTAACTCCACTCTGTCACAATCTCAGTCACAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTAGGAGTTGTGCCGGACGGGAACACTATGTCGGAGATATCCAACTGCAGCTACAGCAAGGTAGCGGTGACGGCGACGGCTCAGTTCTCGGCGGCAGATAGGGAGGCTAGGGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGGAAATTCGAGAAAACGATTCGTTATGCTTCGAGAAAGGCCTATGCTGAAACGAGGCCAAGGATCAAAGGCAGGTTCGCCAAACGCACTGATGCGGATCCTCTAGCTGGATACGGCGTGGTTCCGTCATGTTGA 927 0.5965 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVTPFFESVHSVKASSPINFLDEHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSPYLFSESDPVPYIDLDYAAVDPKAEQKSSGTADGVVPVQSNFEPFTYGYKFNSTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAVTATAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDADPLAGYGVVPSC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01648 308 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cca03g01648 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 307 IPR045281 GO:0009909
Cca03g01648 308 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cca03g01648 308 Pfam CCT motif 251 293 IPR010402 GO:0005515
Cca03g01648 308 CDD Bbox1_BBX-like 5 48 - -
Cca03g01648 308 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cca03g01648 308 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cca03g01648 308 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cca03g01648 308 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cca03g01648 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 307 - -
Cca03g01648 308 ProSiteProfiles CCT domain profile. 251 293 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01648 Cca-Chr3 35527277 35529139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01648 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 54.011 2.62e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca03g01648 zf-B_box 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01648 - - gmx:100794431 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01648 03 35527277 35529139 Cca03g01648 03 35527277 35529139 ECH