Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01647 ATGGGGTATCCCAATTCAGTTTCTTCCTCTTCAGGCCAGATTCGTGCTTCTGATAATGCACTTGTCAGCGGTGGAGGTCAAAGTCACAATGGAAATTTTAGCTATGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTAATGGTCAAGTTGTTGGCCTTTTCGGAGTTTTTGATGGTCATGGTGGTGTCCGTGCTGCTGAATATGTCAAGAAAAACCTGTTTAGTAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAGTTGATGCATATAATCATACCGACTCTGAATTTCTAAAATCCGAAAATAGTCATAACAGAGATGCAGGATCAACTGCATCCACTGCTATTCTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGACTCTAGAGCTGTTATATGCAGGGGTGGAAACGCCATTGCTGTTTCACGAGATCACAAGCCAGACCAAACGGATGAGAGGCAAAGAATTGAAGATGCTGGAGGCTTTGTTATGTGGGCTGGGACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAATATGTTGTTGTTGATCCAGAAATTCAGGAAGAAAAAGTTGACAGCTCCCTTGAATTTCTTATTCTAGCCAGTGATGGGCTATGGGATGTTGTCACAAATGAGGAAGCTGTTGCTATGATTAAACCAATTCAGGATGCTGAGGAGGCAGCAAAGAGGTTGATGGAAGAAGCATCACAGAGAGGGAGTGCTGACAATATCACGTGTGTTGTTGTTCGTTTCTTGATGAACCAAGGTGCTGCTTCTCATAGTAGCTCTGGGGGTAAGCAACAGTCAGTAGGAGGTTTGCGTACATAG 915 0.4339 MGYPNSVSSSSGQIRASDNALVSGGGQSHNGNFSYGYASSPGKRSSMEDFYETRIDGVNGQVVGLFGVFDGHGGVRAAEYVKKNLFSNLISHPKFISDTKSAIVDAYNHTDSEFLKSENSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVVDPEIQEEKVDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDAEEAAKRLMEEASQRGSADNITCVVVRFLMNQGAASHSSSGGKQQSVGGLRT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01647 304 Gene3D - 26 284 IPR036457 -
Cca03g01647 304 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Cca03g01647 304 Pfam Protein phosphatase 2C 62 273 IPR001932 -
Cca03g01647 304 PANTHER ALPHABET, ISOFORM E-RELATED 3 293 - -
Cca03g01647 304 SMART PP2C_4 24 278 IPR001932 -
Cca03g01647 304 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g01647 304 CDD PP2Cc 33 280 IPR001932 -
Cca03g01647 304 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 293 - -
Cca03g01647 304 SMART PP2C_SIG_2 45 280 IPR001932 -
Cca03g01647 304 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Cca03g01647 304 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01647 Cca-Chr3 35493547 35497988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01647 1 292 PP2C-type Phosphatase Gene Family AT4G31750 85.959 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01647 K17506 - gmx:100797070 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01647 03 35493547 35497988 Cca03g01647 03 35493547 35497988 ECH