Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01640 ATGGGGATATATCTCAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGACAATGACCGTCTTAGATATGGTTTATCCTCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCAACTTCATTTTTTGGTGTCTATGATGGTCATGGAGGTGAGGTGGTTGCGAAGTTTTGTGCTAAGTTTCTTCACCAACAGGTGCTCAAAAGTGAAGCATACTTAACTGGAGATATAGGAACCTCCCTTCAGAAAGCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTATCAGTATTGGGGGATAAGTTTAACAAGTTTACTGGGATGCTAGAAGGGTTGATTTGGTCTCCACGAAGCAGTGATGATAACTGCCAAGTTAATGATTGGGCTTTCGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACATCGGGGAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCACGTTGTGTGATATCCCGGAAGGGGCAGGCTTACAATTTGTCTAGAGATCACAAACCTGAACTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAAAAACAAATTGTTGAGCTTTGTGACGAAGATGAATTTATGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCGAGTCAACAACTGGTAGATTTTATTCATGAACAATTGCACTCGGAAACGAGACTTTCTGTAGTGTGTGAAAGAGTACTTGACCGGTGTTTGGCACCATCAACTGCCGGTGGCGAGGGATGTGACAACATGACCATGATATTGGTGCAGTTCAAAAGACCTGCTCAGTCTAGTGCACCTGCAGAAGAGCAATCCTCTTCAAACGGACAAGCTGAACCTGAAACAAAACTAGAGAGAAGTGAAAGTTAG 1056 0.4261 MGIYLSTPKTEKFSEDGDNDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGEVVAKFCAKFLHQQVLKSEAYLTGDIGTSLQKAFLRMDEMMRGQRGWRELSVLGDKFNKFTGMLEGLIWSPRSSDDNCQVNDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPELEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVELCDEDEFMVLACDGIWDCMSSQQLVDFIHEQLHSETRLSVVCERVLDRCLAPSTAGGEGCDNMTMILVQFKRPAQSSAPAEEQSSSNGQAEPETKLERSES 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01640 351 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 332 - -
Cca03g01640 351 SMART PP2C_SIG_2 28 320 IPR001932 -
Cca03g01640 351 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cca03g01640 351 CDD PP2Cc 23 320 IPR001932 -
Cca03g01640 351 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Cca03g01640 351 Pfam Protein phosphatase 2C 155 304 IPR001932 -
Cca03g01640 351 Gene3D - 1 321 IPR036457 -
Cca03g01640 351 ProSiteProfiles PPM-type phosphatase domain profile. 23 320 IPR001932 -
Cca03g01640 351 PANTHER PROTEIN PHOSPHATASE 2C 1 332 IPR015655 GO:0004722|GO:0006470
Cca03g01640 351 SUPERFAMILY PP2C-like 3 322 IPR036457 -
Cca03g01640 351 MobiDBLite consensus disorder prediction 321 351 - -
Cca03g01640 351 SMART PP2C_4 13 318 IPR001932 -
Cca03g01640 351 MobiDBLite consensus disorder prediction 326 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01640 Cca-Chr3 35417431 35423249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01640 1 332 PP2C-type Phosphatase Gene Family AT2G25070 75.367 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01640 K17499 - gmx:100787778 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01640 03 35417431 35423249 Cca03g01640 03 35417431 35423249 ECH
Cca05g00772 05 21433710 21440987 Cca03g01640 03 35417431 35423249 PCT