Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01629 ATGGAACCAACGTGCATCGACACTTCCCTCAACCTTAACGTTATTCCCTCTCCCTCGCCCCACATCGACCATGTGGCACAAGTTTTGGTCGAAGAGTTGCAGCGTCTAAACAGTGAGAATAAGAGGCTAACTGAGACGCTCAACCACGTCTGCGAGAACTATGTTGCTTTGCAGAAACATTTGAGTGAGTTCAGTCAACTGAGGAACACAGATGTTGATAAAGAAGCCACGCCATCGCTGAAGAGAAAGGTCGAGAGTGACAATAATTGTGTGAATCTGTTTGGTATTAACGCTTACACGGAGTGCAGCACTACTACTGAGGAAGAGTCATTCAAAAGGGCCAAGCATAATAGCACTTCACCAAAGGTTTACAAAGTTTCAGTGCGGACAGATGCATCTGATACTAGCTTATATGTGAGGGATGGATATCAGTGGAGAAAATATGGTCAAAAAGTCACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCCCCAGGCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGTTGAGGACCCTAGTGTGTTGGTAACAACTTATGAAGGAGAGCACAACCATGGGCAACCTCAAATGGAAATATCAATGAATTCAAGCCAAAGTGATAGCCCTAGTAGTGCAGGTTCAGTTGCCATGAATCGGAGTGCAGCAGGTCCAATTGTAACGCTTGACTTGGTCCAGTCAAAGTTGGTTGACATAAATGCACAAAAGTCATCTATCCAGCAGTTTTTAGTTCAGCAAATGGCTACTTCTTTGACGAGAGATCCTAATTTCACAGCCGCACTTGCTACTGCCATCTCAGGAAGATTTCTAGAGGATACTACGGTGGGAAAACGTTGA 870 0.4506 MEPTCIDTSLNLNVIPSPSPHIDHVAQVLVEELQRLNSENKRLTETLNHVCENYVALQKHLSEFSQLRNTDVDKEATPSLKRKVESDNNCVNLFGINAYTECSTTTEEESFKRAKHNSTSPKVYKVSVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDPSVLVTTYEGEHNHGQPQMEISMNSSQSDSPSSAGSVAMNRSAAGPIVTLDLVQSKLVDINAQKSSIQQFLVQQMATSLTRDPNFTAALATAISGRFLEDTTVGKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01629 289 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 281 IPR044810 GO:0003700
Cca03g01629 289 Pfam WRKY DNA -binding domain 141 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01629 289 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 281 - -
Cca03g01629 289 SUPERFAMILY WRKY DNA-binding domain 136 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01629 289 Coils Coil 26 53 - -
Cca03g01629 289 SMART WRKY_cls 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01629 289 ProSiteProfiles WRKY domain profile. 141 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01629 289 MobiDBLite consensus disorder prediction 194 221 - -
Cca03g01629 289 Gene3D WRKY domain 122 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01629 Cca-Chr3 35315508 35317306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01629 6 282 WRKY Transcription Factor Family AT1G80840 46.367 2.56e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g01629 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01629 - - gmx:100127373 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00757 05 20913140 20914508 Cca03g01629 03 35315508 35317306 PCT