Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01628 ATGGAAGAGTGTTGTCACACGGTGTTCGGAAAGTACGAGATGGGGAGGCTTCTGGGTAAGGGGACGTTTGCCAAGGTGTATTACGGGAAGCAAATAAGCACGGGGGAGAGCGTGGCGATTAAAGTGATCAACAAGGAGCAGGTGCGGAAGGAGGGAATGATGGAGCAGATCAAACGCGAAATCGCGGTGATGCGTTTGGTGCGTCACCCAAACGTGGTGGAACTAAAAGAAGTGATGGCAACAAAGACGAAAATTTTCTTTGTGATGGAGTACGTGCGAGGCGGGGAACTATTCGCCAAAATCTCGAAAGGGAAACTGAAAGAAGATCAGGCCCGTAAATATTTTCAACAATTAATCAGCGCCGTTGATTACTGCCACAGCAGAGGGGTATCCCACCGCGACCTGAAACCCGAGAACCTTCTCCTGGACGACAACGAGAATCTCAAAATCTCGGACTTCGGACTCTCGGCGCTGCCGGAGCAGCTTCGCTACGATGGACTTCTCCACACCCAGTGCGGCACCCCTGCCTACGTGGCACCCGAAGTGCTGAGAAAAAAAGGGTACGACGGGTCGAAAGCCGATATTTGGTCATGCGGCGTCGTTTTGTATGTTCTCCTGGCTGGGTTTCTCCCTTTCCAGCACGAGAATCTGATGACCATGTACAACAAAGTCCTACGCGCGGAATTCGAGTTTCCACCGTGGTTCTCGCCGGATTCCAAGAGATTGATCTCGAAGATTCTGGTGGCGGATCCGTCCAAGAGAACCACGATTTCCGCGATAACCCGCGTGCCGTGGTTTCGCAAGGGCTTCTCCTCGTTATCCGCGCTGGACACGTGTCAGACGGAGAAGAAGCATGACGCGGTTGCCGAGGAGGGTTCCAAGAGTCCCAAATTCTTCAACGCCTTCGAGTTCATTTCCTCCATGTCTTCCGGCTTCGACCTCTCGGGGCTGTTCGAGAGCAAGAAGAAGACGGCCGCGGTCTTCACCTCCAAGTGCTCCGCGGCGGCCATCGTGGCCAAGATCGTGACGGCGGCGCGGGGGCTGAGCTTCAGGGTGGCGGAGGTGAAGGACTTCAAGATCATGCTGCAGGGGACGGCGGAGGGGCGGAAGGGGAGGCTGGCCGTCACGGCGGAGGTGTTCGAGGTGGCGCCGGAGGTCGCCGTGGTGGAGTTCTCGAAGTCCGCCGGCGACACCTTGGAGTACGCCAAGTTTTGCGAGGAGGACGTGAGGCCCGCGCTCAAGGACATTGTTTGGACGTGGCAAGGGGATGCCACGTGTACTGCTAATGTCCCCAATAGAAAAAAAGAAACGGTGAAAGCACAAGACAGAGATATCTTGGATTAA 1344 0.5536 MEECCHTVFGKYEMGRLLGKGTFAKVYYGKQISTGESVAIKVINKEQVRKEGMMEQIKREIAVMRLVRHPNVVELKEVMATKTKIFFVMEYVRGGELFAKISKGKLKEDQARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDDNENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLRKKGYDGSKADIWSCGVVLYVLLAGFLPFQHENLMTMYNKVLRAEFEFPPWFSPDSKRLISKILVADPSKRTTISAITRVPWFRKGFSSLSALDTCQTEKKHDAVAEEGSKSPKFFNAFEFISSMSSGFDLSGLFESKKKTAAVFTSKCSAAAIVAKIVTAARGLSFRVAEVKDFKIMLQGTAEGRKGRLAVTAEVFEVAPEVAVVEFSKSAGDTLEYAKFCEEDVRPALKDIVWTWQGDATCTANVPNRKKETVKAQDRDILD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01628 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cca03g01628 447 CDD CIPK_C 300 414 - -
Cca03g01628 447 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 431 - -
Cca03g01628 447 Gene3D Kinase associated domain 1, KA1 293 419 - -
Cca03g01628 447 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
Cca03g01628 447 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01628 447 ProSiteProfiles NAF domain profile. 294 319 IPR018451 GO:0007165
Cca03g01628 447 Pfam NAF domain 296 353 IPR004041 GO:0007165
Cca03g01628 447 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01628 447 SUPERFAMILY Protein kinase-like (PK-like) 8 292 IPR011009 -
Cca03g01628 447 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cca03g01628 447 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Cca03g01628 447 CDD STKc_SnRK3 11 265 - -
Cca03g01628 447 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01628 447 PANTHER - 1 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01628 Cca-Chr3 35295257 35297025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01628 2 423 CBL-interacting serine-threonine protein kinases AT5G25110 69.746 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca03g01628 Pkinase 4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01628 - - gmx:100780478 761.14