Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01623 ATGGCAAAGTGTCACCAGAACAACGTCGGATCCGTCGCTCTCGACCACCGCCACTCTGCTAAAAATGACACCGCCGGCGGCCATTTCCGCGTGCTCCGCCGCATGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCTCGCTACCGGTACCGCCAGCGCGGCGGAGAGGAAGATGACGGCGGCGACTTCAGCTCGGCGGCGAGTCACGCAGTGAAGGAGCAGAGGTCGGAGAAACTATCGGATCTGCTGCACGTTGCAGAGAGCGAAACGACGGCGGAGGCGCAGAAGAAGGAAGAGGCATTGGCGGAGCTGAAGCATGTGGTGGCGGAGCTGCGCGGCGAAGACTTCACGAAGCGTCGAATCGCCGCGTCGAGAGTGAGGTCACTCGCGAAGGAAGATTCGGAAGCGAGAGCGGATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGATTGCTCGATTCGGAAGACGTTGATTCTCAAATTGCCTCGCTCTACGCTTTGCTCAACCTCGGAATCGGCAACGATGCGAACAAAGCGGCTATAGTGAAAACCGGCGCTGTGCACAAGATGCTGAAGCTTATTGAATCGCCTAGTGGTTCTAATTCGTCGGTATCTGAAGCGATTGTTGCGAATTTCCTAGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAAAGAATTTAGATGATAGTGAAAGCGCTTCGCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTATATAATCTTTCGATCTGTCAGAGCAACGTTTTGGTGGTTTTGGAAACCGATTTGGTTTGGTTTTTAGTGAACGCGATAGGGGACATGGAAGTGAGTGAGAGGTGTCTCTCGATTCTGAGCAATTTGGTGTCGACGCCGGAGGGCAGAAAGGCTATTAGCGGTGTGAGCCATGCGATTCCGATTTTCATTGATGTGTTGAGTTGGACGGATTCGCCAGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGGTTATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATTGTGTCCTCGCTGCTTGAGTTGACGCTCGTGGGTTCCACCTTGGCTCAGAAGAGAGCCTCCAGGATATTGGAGTGTTTGAGGGTCGACAAAGGGAAACAGGTTTCTGGCAGCTACGGTGGAAACTTGGGTGTTTCTGCTCCTATTTGTGGATCTGGCTCTTCCTCCAAGGAGGGTGGTTTGGTTGAGGAGGAAGATGGTGTGATGAGTGATGAAAAGAAAGCGGTGAAGCAATTAGTGCAGCAGAGTTTGCAGAACAATATGATGAAAATTGTTAAGAGGGCCAACTTGCGTCAGGATTTTGTTCCATCTGCCCATTTTGCTTCACTCACTTCCAGTTCCACTTCCAAGAGCCTGCCATTTTGA 1449 0.5238 MAKCHQNNVGSVALDHRHSAKNDTAGGHFRVLRRMIFDAVSCGGTSRYRYRQRGGEEDDGGDFSSAASHAVKEQRSEKLSDLLHVAESETTAEAQKKEEALAELKHVVAELRGEDFTKRRIAASRVRSLAKEDSEARADLAMLGAIPPLVGLLDSEDVDSQIASLYALLNLGIGNDANKAAIVKTGAVHKMLKLIESPSGSNSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLDDSESASQSQVKQDALRALYNLSICQSNVLVVLETDLVWFLVNAIGDMEVSERCLSILSNLVSTPEGRKAISGVSHAIPIFIDVLSWTDSPECQEKASYVLMVMAHKAYGDRRVMIEAGIVSSLLELTLVGSTLAQKRASRILECLRVDKGKQVSGSYGGNLGVSAPICGSGSSSKEGGLVEEEDGVMSDEKKAVKQLVQQSLQNNMMKIVKRANLRQDFVPSAHFASLTSSSTSKSLPF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01623 482 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 482 - -
Cca03g01623 482 Gene3D - 249 399 IPR011989 -
Cca03g01623 482 MobiDBLite consensus disorder prediction 51 71 - -
Cca03g01623 482 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 482 - -
Cca03g01623 482 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Cca03g01623 482 SMART arm_5 267 305 IPR000225 GO:0005515
Cca03g01623 482 SMART arm_5 219 266 IPR000225 GO:0005515
Cca03g01623 482 SMART arm_5 306 348 IPR000225 GO:0005515
Cca03g01623 482 SMART arm_5 133 173 IPR000225 GO:0005515
Cca03g01623 482 SMART arm_5 175 218 IPR000225 GO:0005515
Cca03g01623 482 Coils Coil 94 114 - -
Cca03g01623 482 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 186 IPR000225 GO:0005515
Cca03g01623 482 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 270 IPR000225 GO:0005515
Cca03g01623 482 Pfam Armadillo/beta-catenin-like repeat 134 171 IPR000225 GO:0005515
Cca03g01623 482 Gene3D - 65 248 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01623 Cca-Chr3 35202337 35204313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01623 99 389 U-box Gene Family AT2G23140 32.192 1.42e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01623 - - gmx:100818576 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00474 05 10341776 10345005 Cca03g01623 03 35202337 35204313 PCT