Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01619 | ATGAGCAGCTTGGTAGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCTATTTATAATATTGATGAGTCAGATGATGATGCTGATTATTTGCCAAGAAAATCAGGGGCAACTCAGGAAAAGTTAGAGAGGATAGAGAGAAGTGATGCGAAAGAGAATTCATGTCAAGCCTGTGGGGAAAATGAAAATCTTGTGAGCTGTGAAACCTGCACATATGTTTACCATCCTAGGTGTTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCGGAATGTGTTAGTCCACTTAACGATATCGATAAGTTATTAGATTGTGAGATGCGCCCTACTACAGCTGGTGACAATGATGCCACAAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCATTTAAGGCTCATCCTCGTCTAAAGACCAAGGTGAACAACTTCCATCAAAAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTAGACCTGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATACGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATTGAAAGATTCAATAGATTTCGTTCTAGGTCCAGCAAATTTTCTTCCATTAAACAAAAAAACAGTGTTAAGGATGGTGCTGAATTGAAGAAACATCAGAAGGAATTTCAACATTATGAGCGTAGCCCTGAATTTCTTTCAGGTGGTACATTACACCCATACCAACTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTAATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAGGGTGTCTCCCCACATTTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCACATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCaaagaaacagaagaagatcaagaaaaaaaaaTCTGGTCAGATAATTAGCGAAAACAAGCAAGACAGGATTAAATTTGATGTTCTTTTGACATCATATGAGATGATCAACTTTGATACGACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGCCACCGTCTGAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAATTTAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAGCTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATACTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTTCATGTTAGAAGGAGTTGAACCGGATATTGATGATGCAAAAGAAGCATACAAACAGCTGCTGGAAACATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGTTTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGGGGACTGGGGATTAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCACGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGTTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGTTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATTCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGCgatcaagttggagatgaagaggctactttggatgatgaagatgaagatgGATTTTTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCTATGGAGACAATGAACAGTTCAGAAAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAATATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAGGGGAAGCGAAACCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAGGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTAACTGATGGAGATTCAAATTCCACTGGAACTACTACTGCTAAAAGGCCTTATAAAAAAAAAGCACGAACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTCACTTTCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACCGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATTCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGCATTACAACATCCTCAAACTCCATTGTTTTCGGATGACATCTTATTGCGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTGCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAAGAGGTCATCTGTCAGGAGTTGAATCTTCCCATTATAAACTTACCAGTTCCAGGACAAGTTGGCCCTCAGGCACAAAATGGTGCAAATTTGACAAATGCAGACGTACCCAACAGTCAATCCAGGGAAAATGGTGGCAGCGATGTAGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAGAAACCAAGCACAGTTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTCGGTGATCCAAAAGCAAATGAAGTAACAAATGAAGAACTTAAAAGTGAACCCAAGGCTACTAATTTTCCAAGTTGTAATAAATTAGGGGACACTGACACTCAAATGATTGATCAACTGCCGCAAGTAGAAATAATAGCTACAGAAGAAATTTCGGCTGCTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGACTTTACAATGAGATGTGCAAAATAGTGGAAGTAAACCCGGTCGATTTAGTTCAAACTTCTTTGGCAAGAGAACCGGCAGAGCTGAATGAGCTCAATGTAGTGAAGAATTTTCCTCCACTAGAAACCCTATGCGAAGACGTTAACAGAATTCTAACACCCACACAAGAACAACCTGTAGCAGAAATACCGACACCAAATTCAGATAGCAAATCAGAGGTCATGTCACACGATGAAGTTTTGGGCTCCAAATCACTGCCAATCCCTCAAGATCCCTGCAAACCTGAAGATTCAGCAGACAATGAGAGTAAAGATATGATAACTGAATCTGAACTTATAAAAGAAAGTTGCTCAAGCCTGGTAGAAGAGAAGAATGAAACACCCACTCTTCCGGAGAAAGAGGAAAGTAATGCAGAAATGGATGAAAGTATGACTGATGCTGAGTTGAATGAAAACCCAGAGAAATCTGATGCTGGGGTCGTTGTATTGAATGGTTAA | 4347 | 0.3989 | MSSLVERLRVRSDRRPIYNIDESDDDADYLPRKSGATQEKLERIERSDAKENSCQACGENENLVSCETCTYVYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKLLDCEMRPTTAGDNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKAHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSIKQKNSVKDGAELKKHQKEFQHYERSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIISENKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPFMLEGVEPDIDDAKEAYKQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETMNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTTAKRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTFRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFALQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVGPQAQNGANLTNADVPNSQSRENGGSDVAADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSEPKATNFPSCNKLGDTDTQMIDQLPQVEIIATEEISAACDSDPNRLELVRLYNEMCKIVEVNPVDLVQTSLAREPAELNELNVVKNFPPLETLCEDVNRILTPTQEQPVAEIPTPNSDSKSEVMSHDEVLGSKSLPIPQDPCKPEDSADNESKDMITESELIKESCSSLVEEKNETPTLPEKEESNAEMDESMTDAELNENPEKSDAGVVVLNG | 1448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01619 | 1448 | Pfam | CHD subfamily II, SANT-like domain | 933 | 1066 | IPR009462 | GO:0003677|GO:0006338 | |
| Cca03g01619 | 1448 | SUPERFAMILY | Chromo domain-like | 66 | 177 | IPR016197 | - | |
| Cca03g01619 | 1448 | Coils | Coil | 838 | 858 | - | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 1378 | 1423 | - | - | |
| Cca03g01619 | 1448 | CDD | CD2_tandem | 190 | 239 | - | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 1336 | 1448 | - | - | |
| Cca03g01619 | 1448 | SMART | helicmild6 | 638 | 722 | IPR001650 | - | |
| Cca03g01619 | 1448 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 192 | 254 | IPR000953 | - | |
| Cca03g01619 | 1448 | SMART | DUF1087_2 | 839 | 905 | IPR009463 | - | |
| Cca03g01619 | 1448 | Pfam | PHD-finger | 54 | 96 | IPR019787 | - | |
| Cca03g01619 | 1448 | CDD | SF2_C_SNF | 607 | 733 | - | - | |
| Cca03g01619 | 1448 | Gene3D | - | 278 | 528 | IPR038718 | - | |
| Cca03g01619 | 1448 | PANTHER | CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE | 5 | 1055 | - | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 1336 | 1354 | - | - | |
| Cca03g01619 | 1448 | Gene3D | - | 103 | 175 | - | - | |
| Cca03g01619 | 1448 | ProSiteProfiles | Rubredoxin-like domain profile. | 61 | 105 | IPR024934 | GO:0005506 | |
| Cca03g01619 | 1448 | SMART | chromo_7 | 99 | 168 | IPR000953 | - | |
| Cca03g01619 | 1448 | SMART | chromo_7 | 190 | 244 | IPR000953 | - | |
| Cca03g01619 | 1448 | Pfam | CHD subfamily II, DUF1087 | 844 | 902 | IPR009463 | - | |
| Cca03g01619 | 1448 | ProSiteProfiles | Zinc finger PHD-type profile. | 51 | 98 | IPR019787 | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 1136 | 1172 | - | - | |
| Cca03g01619 | 1448 | Pfam | Helicase conserved C-terminal domain | 609 | 722 | IPR001650 | - | |
| Cca03g01619 | 1448 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 100 | 182 | IPR000953 | - | |
| Cca03g01619 | 1448 | SMART | DUF1086_2 | 910 | 1069 | IPR009462 | GO:0003677|GO:0006338 | |
| Cca03g01619 | 1448 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 612 | 773 | IPR001650 | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 904 | 952 | - | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 1136 | 1158 | - | - | |
| Cca03g01619 | 1448 | ProSitePatterns | Zinc finger PHD-type signature. | 54 | 95 | IPR019786 | - | |
| Cca03g01619 | 1448 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 193 | 241 | IPR023780 | - | |
| Cca03g01619 | 1448 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 102 | 157 | IPR023780 | - | |
| Cca03g01619 | 1448 | Pfam | SNF2-related domain | 306 | 585 | IPR000330 | GO:0005524|GO:0140658 | |
| Cca03g01619 | 1448 | Gene3D | - | 1036 | 1213 | - | - | |
| Cca03g01619 | 1448 | SMART | ultradead3 | 282 | 495 | IPR014001 | - | |
| Cca03g01619 | 1448 | CDD | CD1_tandem | 98 | 171 | - | - | |
| Cca03g01619 | 1448 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 245 | 519 | IPR027417 | - | |
| Cca03g01619 | 1448 | Gene3D | - | 529 | 753 | IPR027417 | - | |
| Cca03g01619 | 1448 | Gene3D | - | 180 | 241 | - | - | |
| Cca03g01619 | 1448 | SMART | PHD_3 | 53 | 96 | IPR001965 | - | |
| Cca03g01619 | 1448 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 5 | 1055 | - | - | |
| Cca03g01619 | 1448 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 521 | 777 | IPR027417 | - | |
| Cca03g01619 | 1448 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 102 | IPR013083 | - | |
| Cca03g01619 | 1448 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 298 | 484 | IPR014001 | - | |
| Cca03g01619 | 1448 | SUPERFAMILY | Chromo domain-like | 178 | 242 | IPR016197 | - | |
| Cca03g01619 | 1448 | MobiDBLite | consensus disorder prediction | 904 | 922 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01619 | Cca-Chr3 | 35097160 | 35115306 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g01619 | 308 | 783 | RAD5 or RAD16-like Gene Family | AT1G02670 | 23.381 | 4.86e-31 | 129 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Cca03g01619 | SNF2_N | 1.3e-65 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01619 | K11643 | - | gmx:100790230 | 2652.86 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g00476 | 05 | 10450099 | 10469843 | Cca03g01619 | 03 | 35097160 | 35115306 | PCT |