Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01618 ATGACCGTAGACAACAGAATGAACGATTCCCCCGACGATTTTCCCGTCGGAATGCGTGTTCTCGCGGTTGACGATGACCCCACCTGCCTCTTAGTTTTGGAAACTCTCCTCAGAAGATGTCAATACCATGTTACCACGACTAATCAAGCAATAACGGCATTGGCGCTGTTGAGAGAACACAAGGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACAAAGCTGGTGATGAAGGGGATTGCTCACGGAGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAAGAGAAGAAGAAAACCAGCAACCTAGACAAACCTACTTCTGATAGTGGCAATGGACTAGGGTCATCAGGAGCAGGAAATTCTGAACAAAATGAgaagctgactaaaaaaaggaaggatcaagatgaggatgaagatgaggaACAGGAGAACGATCAGGACAATGAGGACCCGTCAACCCAAAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTTGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATCTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAGCAGGCTAATATGGTGGCGGCCTTAGGAGGTGCAGATGCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTAAGTGGTTCAGGACAGCTTCAAAACAATGGTTTCAGATCCTTTCCATCTAGTGGGATAATTAATAGATTGAACACCCCTGCTGGTTTGAATGTGCATGGATTCCCATCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAACCACAATGATCATCTTAAGTTCCAGTCAGCCATGGTTCCTGTTAATCAGAATGGCATTCAGGGGATGCCAATGTCTGTAGGGCTTGATCAATTGCAAAACAATAAAGGTGTTATTTCTGTTCACTTTGATGCCAAAACTTTTCCCATCTTGAATAAACTCTCAGATCCAAGACCAAAAGTAACCACATCTGGCTCTCACACTCCAGATCTGGGTATCTCAAACAATGCCTTGATGGTGGAACCACGCCTTCAAGGCACACAAGGGAGTGTAAGATATGAAACTTTATCTTCATCACCAGCCTCTCAAAATTCAGAGTTTTCCTTGTCTATGCTGGATCAAGGTAGATATAGTGATAATTGGTCAAGTGCTGTTCAGCCATCTGTGATTCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAGACGGACTAATATACGTCCTACAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATTTGAGTGGTCCATCCATCACTTCACTGTCTAGACAACCCCATGATTCAATTACAGATATGCACTCTGAAGGTGTGATTTTTACTAACAGACCTGGTCTGTTAAGCAGTAATGCGCCATTTCAAGGGTGGGATGACCATAGTCAGGATGCTACTCACCATTCAAATATTATGTTTGGATCAATAAACTCACTGAATCCAGTTAATGGTGCAGCAACAGACTCAAATTTACACAGAAACTTGGACTTTAGCTATTGTGATCCTTTACAAATGAAGCATGATGGGTTTGTGGAGTTAACTGAAGAGACCTCATTGAAACATCAGGGGAATATCATGAACCAGCAGAAGTCTCAACAAAGTGGTTTTTCTAATAATCTTGGTTCGCTGGAAGACTTGGTTAGTTCGATGATGAAACAAGTAATAACATTTACGCAATATACTTATATACTGAAGTTTTTCCCATAA 1980 0.4131 MTVDNRMNDSPDDFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGIAHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKKKTSNLDKPTSDSGNGLGSSGAGNSEQNEKLTKKRKDQDEDEDEEQENDQDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADASYLRMSSVSGVGHLQTLSGSGQLQNNGFRSFPSSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNHNDHLKFQSAMVPVNQNGIQGMPMSVGLDQLQNNKGVISVHFDAKTFPILNKLSDPRPKVTTSGSHTPDLGISNNALMVEPRLQGTQGSVRYETLSSSPASQNSEFSLSMLDQGRYSDNWSSAVQPSVIQTNSYPPSECFRRTNIRPTDNMASVPLQGGNLSGPSITSLSRQPHDSITDMHSEGVIFTNRPGLLSSNAPFQGWDDHSQDATHHSNIMFGSINSLNPVNGAATDSNLHRNLDFSYCDPLQMKHDGFVELTEETSLKHQGNIMNQQKSQQSGFSNNLGSLEDLVSSMMKQVITFTQYTYILKFFP 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01618 659 SUPERFAMILY CheY-like 17 141 IPR011006 -
Cca03g01618 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 IPR045279 GO:0009736
Cca03g01618 659 CDD REC_typeB_ARR-like 20 134 - -
Cca03g01618 659 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Cca03g01618 659 MobiDBLite consensus disorder prediction 152 171 - -
Cca03g01618 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Cca03g01618 659 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cca03g01618 659 Gene3D - 17 153 - -
Cca03g01618 659 SMART REC_2 18 130 IPR001789 GO:0000160
Cca03g01618 659 Coils Coil 172 192 - -
Cca03g01618 659 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cca03g01618 659 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Cca03g01618 659 MobiDBLite consensus disorder prediction 141 206 - -
Cca03g01618 659 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Cca03g01618 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 642 - -
Cca03g01618 659 Gene3D - 200 263 - -
Cca03g01618 659 PIRSF RR_ARR_type-B 1 654 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01618 Cca-Chr3 35090587 35095060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01618 1 380 Response Regulator Gene Family AT2G25180 58.824 1.11e-133 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca03g01618 Response_reg 5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01618 - K14491 gmx:100809002 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00478 05 10507543 10512041 Cca03g01618 03 35090587 35095060 PCT