Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g01616 | ATGGTAACACTGAACCACGAGGCTCCACTCTATGATAATAACCTCTCCCATGAAGAGACTCCTCCAAGTCGAAGCACAGCATTGCAAAATCCACATGAGAAGAAACAGCTATCTGTTGAGGCAAAAGCAGATACTTTGTTGGATCTAAATGCCCCTAGCGATGATTCTGCTGTTGGGTGCAGTCCAGTGCTGAATCTTATTACATATTTAGACACGGATGAAAACCCTCATGGAGTGTTCTCTTGCAAGTACTGCCAGAGAAAGTTCTACAGTTCACAAGCTCTCGGGGGACACCAAAATGCTCACAGGAGAGAGAGGTCATTTGCAAAGAGAGGTCAGAGATCAGGAACAACTTTTGGGATACCCTTTCTTCATAATAATCACCTTCCACACTATGCCACTATGGCTTCTCTGCCTCTGCATGGTGCTTGTAGTAATAAACCACTTAGATTTCAGGCACACTCCATGGTTCAGAAATCTTCTCATTTTTCATTCAAAGGGTTTGGAAGCACTTTGGGACATCATAGGGGGTCAAGACTCCTTATTGATCAACAACCTGGAATATGCCACAAATCGTCACGAGGCAGTGTTGGGAGATTCGATGTGGTGAAGACCATGACCAATTCAGAAACCAATGAAGAAATCAGTGGGTATCTGGTTAGTGGAATTACTCGTTTGAAGACTAACCAAGAAGGAACGAAGCACCTTGACTTGTCCTTAAAGCTCTGA | 729 | 0.439 | MVTLNHEAPLYDNNLSHEETPPSRSTALQNPHEKKQLSVEAKADTLLDLNAPSDDSAVGCSPVLNLITYLDTDENPHGVFSCKYCQRKFYSSQALGGHQNAHRRERSFAKRGQRSGTTFGIPFLHNNHLPHYATMASLPLHGACSNKPLRFQAHSMVQKSSHFSFKGFGSTLGHHRGSRLLIDQQPGICHKSSRGSVGRFDVVKTMTNSETNEEISGYLVSGITRLKTNQEGTKHLDLSLKL | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g01616 | 242 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 242 | - | - | |
Cca03g01616 | 242 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 6 | 242 | IPR044246 | GO:0009788 | |
Cca03g01616 | 242 | Gene3D | Classic Zinc Finger | 66 | 119 | - | - | |
Cca03g01616 | 242 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 82 | 102 | IPR013087 | - | |
Cca03g01616 | 242 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 80 | 107 | IPR013087 | - | |
Cca03g01616 | 242 | MobiDBLite | consensus disorder prediction | 16 | 33 | - | - | |
Cca03g01616 | 242 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 108 | IPR036236 | - | |
Cca03g01616 | 242 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g01616 | Cca-Chr3 | 35065228 | 35066052 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g01616 | 29 | 242 | C2H2 Transcription Factor Family | AT5G10970 | 36.585 | 1.46e-31 | 115 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca03g01616 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g01616 | - | - | gmx:100783199 | 333.569 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g00480 | 05 | 10597463 | 10598817 | Cca03g01616 | 03 | 35065228 | 35066052 | PCT |