Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01616 ATGGTAACACTGAACCACGAGGCTCCACTCTATGATAATAACCTCTCCCATGAAGAGACTCCTCCAAGTCGAAGCACAGCATTGCAAAATCCACATGAGAAGAAACAGCTATCTGTTGAGGCAAAAGCAGATACTTTGTTGGATCTAAATGCCCCTAGCGATGATTCTGCTGTTGGGTGCAGTCCAGTGCTGAATCTTATTACATATTTAGACACGGATGAAAACCCTCATGGAGTGTTCTCTTGCAAGTACTGCCAGAGAAAGTTCTACAGTTCACAAGCTCTCGGGGGACACCAAAATGCTCACAGGAGAGAGAGGTCATTTGCAAAGAGAGGTCAGAGATCAGGAACAACTTTTGGGATACCCTTTCTTCATAATAATCACCTTCCACACTATGCCACTATGGCTTCTCTGCCTCTGCATGGTGCTTGTAGTAATAAACCACTTAGATTTCAGGCACACTCCATGGTTCAGAAATCTTCTCATTTTTCATTCAAAGGGTTTGGAAGCACTTTGGGACATCATAGGGGGTCAAGACTCCTTATTGATCAACAACCTGGAATATGCCACAAATCGTCACGAGGCAGTGTTGGGAGATTCGATGTGGTGAAGACCATGACCAATTCAGAAACCAATGAAGAAATCAGTGGGTATCTGGTTAGTGGAATTACTCGTTTGAAGACTAACCAAGAAGGAACGAAGCACCTTGACTTGTCCTTAAAGCTCTGA 729 0.439 MVTLNHEAPLYDNNLSHEETPPSRSTALQNPHEKKQLSVEAKADTLLDLNAPSDDSAVGCSPVLNLITYLDTDENPHGVFSCKYCQRKFYSSQALGGHQNAHRRERSFAKRGQRSGTTFGIPFLHNNHLPHYATMASLPLHGACSNKPLRFQAHSMVQKSSHFSFKGFGSTLGHHRGSRLLIDQQPGICHKSSRGSVGRFDVVKTMTNSETNEEISGYLVSGITRLKTNQEGTKHLDLSLKL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01616 242 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 242 - -
Cca03g01616 242 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 242 IPR044246 GO:0009788
Cca03g01616 242 Gene3D Classic Zinc Finger 66 119 - -
Cca03g01616 242 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Cca03g01616 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Cca03g01616 242 MobiDBLite consensus disorder prediction 16 33 - -
Cca03g01616 242 SUPERFAMILY beta-beta-alpha zinc fingers 79 108 IPR036236 -
Cca03g01616 242 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01616 Cca-Chr3 35065228 35066052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01616 29 242 C2H2 Transcription Factor Family AT5G10970 36.585 1.46e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g01616 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01616 - - gmx:100783199 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00480 05 10597463 10598817 Cca03g01616 03 35065228 35066052 PCT